CellMLPhysiome: B - F
B
bhalla_iyengar_1999
— v0.0.1Bhalla, Iyengar, 1999
Details
bindschadler_sneyd_2001
— v0.0.1Bindschadler, Sneyd, 2001
Details
Parameters:
Name | Description |
---|---|
R1 | 6.0 |
R5 | 1.6 |
Kp | 0.18 |
D | 0.01 |
k1 | 44.0 |
j_leak | 0.2 |
r4 | 20.0 |
kf | 28.0 |
r2 | 100.0 |
R3 | 50.0 |
k3 | 1.6 |
Vp | 1.2 |
k2 | 26.5 |
p | 0.2778 |
States:
Name | Description |
---|---|
c2(time) | 0.1 |
h2(time) | 0.1 |
h1(time) | 0.8 |
c1(time) | 0.3 |
bingzheng_zhenye_liansong_1990
— v0.0.1Bingzheng, Zhenye, Liansong, 1990
Details
Parameters:
Name | Description |
---|---|
a3 | 1.38 |
a2 | 0.0164 |
a1 | 0.000517 |
b3 | 0.0138 |
b2 | 0.053 |
a4 | 0.6 |
a7 | 0.0081 |
a6 | 0.0084 |
a5 | 0.00498 |
a0 | 0.0014 |
b1 | 0.0598 |
States:
Name | Description |
---|---|
X2(time) | 0.0 |
X1(time) | 10.0 |
X3(time) | 0.0 |
bondarenko_szigeti_bett_kim_rasmusson_2004
— v0.0.1Bondarenko, Szigeti, Bett, Kim, Rasmusson, 2004
Details
Parameters:
Name | Description |
---|---|
Kpc_max | 0.23324 |
R | 8.314 |
T | 298.0 |
stim_start | 20.0 |
Km_CSQN | 800.0 |
Kpcb | 0.0005 |
k_minus_htrpn | 3.2e-5 |
Km_Nai | 21000.0 |
k_plus_a | 0.006075 |
kf | 0.023761 |
Km_Cl | 10.0 |
Ko | 5400.0 |
i_NaK_max | 0.88 |
Cm | 1.0 |
v3 | 0.45 |
Km_CMDN | 0.238 |
E_Cl | -40.0 |
g_Kto_f | 0.0798 |
k_sat | 0.1 |
K_mNa | 87500.0 |
eta | 0.35 |
LTRPN_tot | 70.0 |
g_Ks | 0.00575 |
Acap | 0.0001534 |
i_CaL_max | 7.0 |
tau_tr | 20.0 |
g_Kr | 0.078 |
Km_pCa | 0.5 |
K_mCa | 1380.0 |
k_minus_a | 0.07125 |
stim_duration | 0.5 |
k_minus_b | 0.965 |
v1 | 4.5 |
i_pCa_max | 1.0 |
Cao | 1800.0 |
Vmyo | 2.584e-5 |
Km_up | 0.5 |
g_Nab | 0.0026 |
tau_xfer | 8.0 |
g_Kto_s | 0.0629 |
Kpc_half | 20.0 |
Km_Ko | 1500.0 |
stim_period | 71.43 |
stim_end | 100000.0 |
k_minus_ltrpn | 0.0196 |
kb | 0.036778 |
k_plus_b | 0.00405 |
CSQN_tot | 15000.0 |
CMDN_tot | 50.0 |
E_CaL | 63.0 |
Nao | 140000.0 |
HTRPN_tot | 140.0 |
g_Na | 13.0 |
VJSR | 1.2e-7 |
k_plus_c | 0.009 |
g_Cab | 0.000367 |
stim_amplitude | -80.0 |
g_ClCa | 10.0 |
VNSR | 2.098e-6 |
m | 3.0 |
g_Kss | 0.0324 |
v2 | 1.74e-5 |
k_minus_c | 0.0008 |
Vss | 1.485e-9 |
g_CaL | 0.1729 |
k_plus_ltrpn | 0.0327 |
g_Kur | 0.0975 |
k_NaCa | 292.8 |
k_plus_htrpn | 0.00237 |
F | 96.5 |
n | 4.0 |
States:
Name | Description |
---|---|
C_Na2(time) | 0.020752 |
O_K(time) | 0.000175298 |
O_Na(time) | 7.13483e-7 |
ato_f(time) | 0.00265563 |
P_C2(time) | 0.00016774 |
C2(time) | 0.000124216 |
I2_Na(time) | 1.55787e-9 |
HTRPN_Ca(time) | 125.29 |
C3(time) | 5.78679e-9 |
C_K2(time) | 0.000641229 |
O(time) | 9.30308e-19 |
I2(time) | 3.45847e-14 |
IC_Na2(time) | 0.0113879 |
C_Na1(time) | 0.000279132 |
P_RyR(time) | 0.0 |
nKs(time) | 0.000262753 |
C4(time) | 1.19816e-13 |
ito_f(time) | 0.999977 |
Nai(time) | 14237.1 |
I1_Na(time) | 6.73345e-7 |
Cass(time) | 0.115001 |
IC_Na3(time) | 0.34278 |
ato_s(time) | 0.000417069 |
V(time) | -82.4202 |
LTRPN_Ca(time) | 11.2684 |
IF_Na(time) | 0.000153176 |
CaJSR(time) | 1299.5 |
C_K1(time) | 0.000992513 |
aur(time) | 0.000417069 |
iKss(time) | 1.0 |
iur(time) | 0.998543 |
P_O1(time) | 1.49102e-5 |
Ki(time) | 143720.0 |
ito_s(time) | 0.998543 |
I_K(time) | 3.19129e-5 |
CaNSR(time) | 1299.5 |
I3(time) | 1.85106e-14 |
Cai(time) | 0.115001 |
P_O2(time) | 9.51726e-11 |
aKss(time) | 0.000417069 |
I1(time) | 4.97923e-19 |
bonhoeffer_rembiszewski_ortiz_nixon_2000
— v0.0.1Bonhoeffer, Rembiszewski, Ortiz, Nixon, 2000
Details
Parameters:
Name | Description |
---|---|
p | 0.05 |
c | 0.3 |
b | 0.001 |
dE | 0.1 |
dT | 0.01 |
K_ | 5.0 |
qa | 0.001 |
dI | 0.3 |
al | 0.01 |
ql | 0.001 |
s | 10.0 |
K | 0.1 |
dE_ | 0.25 |
States:
Name | Description |
---|---|
E(time) | 1.0 |
T(time) | 1.0 |
I(time) | 1.0 |
Il(time) | 1.0 |
borghans_1997
— v0.0.1Borghans 1997
Details
Parameters:
Name | Description |
---|---|
K_y | 0.2 |
K_p | 1.0 |
K_z | 0.3 |
a | 10000.0 |
K_2s | 0.0265 |
V_M2 | 6.5 |
K_d | 0.4 |
V_M2i | 3.1 |
K_f | 0.5 |
K_2 | 0.1 |
K_3s | 0.1 |
upsilon_p | 2.5 |
d | 100.0 |
V_M2s | 1.5 |
V_M3s | 0.169 |
K_3z | 0.022 |
k_d | 5000.0 |
K_a | 0.2 |
upsilon_d | 80.0 |
V_M3i | 25.0 |
v_0 | 0.015 |
beta | 1.0 |
K_2i | 0.005 |
V_M3 | 19.5 |
epsilon | 0.1 |
K_3y | 0.065 |
K | 1.0 |
k_r | 5.0 |
v_1 | 0.012 |
n | 4.0 |
States:
Name | Description |
---|---|
Z(time) | 0.0 |
rho(time) | 0.2 |
A(time) | 0.5 |
Y(time) | 0.0 |
X(time) | 0.5 |
bornheimer_maurya_farquhar_subramaniam_2004
— v0.0.1Bornheimer et al. 2004
Details
Parameters:
Name | Description |
---|---|
G_tot | 1.0e-8 |
P_minus2 | 25.0 |
P_minus4 | 25.0 |
k1 | 529000.0 |
P_minus3 | 0.013 |
k2 | 8.38e-6 |
P_minus1 | 0.013 |
States:
Name | Description |
---|---|
Pi_(time) | 0.0044 |
RG(time) | 0.0 |
T(time) | 0.000468 |
RGD(time) | 0.0 |
GD(time) | 1.0e-8 |
GAD(time) | 0.0 |
GT(time) | 0.0 |
RGT(time) | 0.0 |
A(time) | 0.0 |
G(time) | 0.0 |
R(time) | 1.0e-6 |
GA(time) | 0.0 |
RGAT(time) | 0.0 |
RGA(time) | 0.0 |
D(time) | 0.000149 |
GAT(time) | 0.0 |
RGAD(time) | 0.0 |
boyett_zhang_garny_holden_2001
— v0.0.1Boyett, Zhang, Garny, Holden, 2001
Details
Parameters:
Name | Description |
---|---|
alpha_r | 333.5 |
f_u | 0.06 |
CmCentre | 2.0e-5 |
Na_i | 8.0 |
T | 310.0 |
alpha_ur | 533.6 |
alpha_ds | 3300.0 |
K_m_K | 0.621 |
Ca_i | 0.0001 |
d_NaCa | 0.0001 |
B_s | 0.2 |
dCell | 0.0 |
g_K_r_Centre | 0.000797 |
g_b_Ca_Periphery | 4.3e-5 |
k_NaCa_Periphery | 8.8e-6 |
g_to_Centre | 0.00491 |
g_K_s_Periphery | 0.0104 |
g_Ca_T_Centre | 0.0043 |
beta_fR | 2.0 |
f_r | 0.3 |
g_f_K_Periphery | 0.0069 |
g_Na_Periphery | 1.2e-6 |
g_Na_Centre | 0.0 |
i_p_max_Periphery | 0.16 |
g_Ca_L_Centre | 0.0058 |
alpha_fR | 6670.0 |
g_b_K_Centre | 2.52e-5 |
g_to_Periphery | 0.03649 |
i_Ca_P_max | 0.24 |
g_b_Ca_Centre | 1.32e-5 |
Na_o | 140.0 |
g_sus_Periphery | 0.0114 |
K_i | 140.0 |
K_m_u | 0.005 |
Ca_o | 2.0 |
g_b_Na_Periphery | 0.000189 |
E_Ca_T | 45.0 |
tau_P_i | 0.002 |
g_st | 0.00214 |
g_Ca_L_Periphery | 0.0659 |
f_d | 0.1 |
B_d | 0.4 |
g_K_r_Periphery | 0.016 |
K_o | 5.4 |
K_m_Na | 5.64 |
Vol_c | 8.0e-12 |
K_m_b | 0.002 |
CmPeriphery | 6.5e-5 |
g_K_s_Centre | 0.000518 |
alpha_1 | 0.172 |
g_f_Na_Centre | 0.000548 |
J_Ca_u_max | 9.6e-10 |
g_sus_Centre | 6.65e-5 |
E_Ca_L | 46.4 |
gamma_NaCa | 0.5 |
i_p_max_Centre | 0.0478 |
g_f_Na_Periphery | 0.0069 |
K_m_r | 0.001 |
g_f_K_Centre | 0.000548 |
g_b_K_Periphery | 8.19e-5 |
g_b_Na_Centre | 5.8e-5 |
k_NaCa_Centre | 2.7e-6 |
R | 8314.0 |
g_Ca_T_Periphery | 0.0139 |
J_Ca_P_max | 9.6e-10 |
F | 96845.0 |
States:
Name | Description |
---|---|
xs(time) | 0.082293827208 |
y(time) | 0.03889291759 |
f_T(time) | 0.038968420558 |
P_af(time) | 0.13034201158 |
d_L(time) | 0.04804900895 |
m(time) | 0.092361701692 |
d_s(time) | 0.23 |
P_as(time) | 0.46960956028 |
q(time) | 0.29760539675 |
d_T(time) | 0.42074047435 |
h2(time) | 0.01445216109 |
V(time) | -39.013558536 |
Ca_u(time) | 6.983 |
Ca_d(time) | 0.001544 |
f_s(time) | 0.283 |
r(time) | 0.064402950262 |
P_i(time) | 0.87993375273 |
f_L(time) | 0.48779845203 |
Ca_r(time) | 4.909 |
h1(time) | 0.015905380261 |
Ca_s(time) | 0.05487 |
f_R(time) | 0.188 |
brightman_fell_2000
— v0.0.1Brightman, Fell, 2000
Details
Parameters:
Name | Description |
---|---|
k14 | 0.005 |
f | 0.2 |
V_22 | 920000.0 |
v_1 | 1.0 |
kn3 | 0.7 |
k25 | 8.3 |
K_21 | 9000.0 |
V_26 | 400000.0 |
k9 | 12.0 |
kn12 | 10.0 |
V_20 | 920000.0 |
k8 | 0.35 |
K_22 | 600000.0 |
DT | 6.5 |
V_28 | 75.0 |
kn1 | 0.73 |
k12 | 0.0163 |
K_25 | 90000.0 |
K_20 | 600000.0 |
k16 | 0.0012 |
k_13 | 15.0 |
K_24 | 600000.0 |
k_11 | 0.0 |
kn14 | 60.0 |
k3 | 0.0484 |
k17 | 27.0 |
k2_4 | 1.0e-7 |
V_24 | 200000.0 |
kn7 | 0.000347 |
K_19 | 9000.0 |
k21 | 50.0 |
k15 | 720.0 |
K_23 | 90000.0 |
k19 | 50.0 |
k4 | 0.001383 |
k6 | 0.35 |
V_18 | 97000.0 |
kn11 | 3.81 |
K_26 | 600000.0 |
k11 | 0.002 |
kn16 | 3.0 |
K_10 | 6000.0 |
K_28 | 20000.0 |
k23 | 8.3 |
E | 0.12 |
k1 | 3.8421e8 |
V_10 | 300000.0 |
K_27 | 600000.0 |
k27 | 1.6 |
k7 | 1.0 |
K_18 | 6000.0 |
K_9 | 6000.0 |
k2 | 0.7 |
k5 | 0.35 |
States:
Name | Description |
---|---|
MEKPP(time) | 0.0 |
X(time) | 0.0 |
Ras_GAP(time) | 0.0 |
GSP(time) | 0.0 |
ShcP(time) | 0.0 |
RL(time) | 0.0 |
t(time) | 0.0 |
ERK(time) | 750000.0 |
RasGTP(time) | 200.0 |
Li(time) | 0.0 |
ERKPP(time) | 0.0 |
Rs(time) | 11100.0 |
Ri(time) | 3900.0 |
ERKP(time) | 0.0 |
Ras_ShcGS(time) | 0.0 |
R2L2(time) | 0.0 |
RasGDP(time) | 19800.0 |
Rafa(time) | 0.0 |
MEK(time) | 360000.0 |
L(time) | 1.0e-7 |
GAP(time) | 15000.0 |
ShcGS(time) | 0.0 |
R2i(time) | 0.0 |
GS(time) | 20000.0 |
Raf(time) | 10000.0 |
Ras_Raf(time) | 0.0 |
Shc(time) | 30000.0 |
MEKP(time) | 0.0 |
R2_CPP(time) | 0.0 |
brown_choe_shanahan_czeisler_1997
— v0.0.1Brown, Choe, Shanahan, Czeisler, 1997
Details
Parameters:
Name | Description |
---|---|
tau_C | 23.67 |
tau_lamda | 24.04 |
A_max | 6.51 |
tau_I | 2.82 |
tau_alpha | 25.92 |
t_off | 1792.0 |
t_on | 1316.0 |
States:
Name | Description |
---|---|
H1(time) | 0.05 |
H2(time) | 1.0 |
bueno_2007
— v0.0.1Bueno, 2007
Details
Parameters:
Name | Description |
---|---|
mcell | 0.0 |
tau_v_plus | 1.45 |
endo | 0.0 |
u_m | 0.3 |
u_p | 0.13 |
k_s | 2.0994 |
V_0 | -83.0 |
u_s | 0.9087 |
V_fi | 2.7 |
tau_s1 | 2.7342 |
epi | 1.0 |
States:
Name | Description |
---|---|
u(time) | 0.0 |
v(time) | 1.0 |
s(time) | 0.0 |
w(time) | 1.0 |
bugbuster
— v0.0.1Bugbuster Standard Virtual Biological Machine
Details
Please click on one of the exposures below for documentation and model file access.
bugenhagen_cowley_beard_2010
— v0.0.1Bugenhagen 2010
Details
A computational model of the overall baroreflex heart rate control system.
butera_rinzel_smith_1999
— v0.0.1Butera, Rinzel, Smith, 1999
Details
Parameters:
Name | Description |
---|---|
C | 21.0 |
theta_h | -48.0 |
sigma_h | 6.0 |
g_KS | 5.6 |
E_K | -85.0 |
tau_k_max | 10000.0 |
sigma_m | -5.0 |
sigma_n | -4.0 |
g_NaP | 2.8 |
i_app | 0.0 |
sigma_k | -6.0 |
E_L | -50.0 |
g_Na | 28.0 |
theta_n | -29.0 |
g_L | 2.8 |
theta_k | -38.0 |
tau_h_max | 10000.0 |
g_K | 11.2 |
E_syn_e | 0.0 |
g_tonic_e | 0.0 |
tau_n_max | 10.0 |
E_Na | 50.0 |
theta_m | -34.0 |
States:
Name | Description |
---|---|
V(time) | -55.0 |
h(time) | 0.46 |
n(time) | 0.01 |
k(time) | 0.22 |
butera_rinzel_smith_II_1999
— v0.0.1Butera, Rinzel, Smith II 1999
Details
C
calzone_thieffry_tyson_novak_2007
— v0.0.1Calzone, Thieffry, Tyson, Novak, 2007
Details
Parameters:
Name | Description |
---|---|
k_iwee__ | 1.0 |
j_m | 0.05 |
k_sstg | 0.02 |
k_astg__ | 1.0 |
j_afz | 0.01 |
k_awee | 0.3 |
k_istg | 0.3 |
k_in | 0.15 |
k_wee__ | 1.0 |
j_iie | 0.01 |
k_ez | 0.5 |
k_sc | 0.01 |
Wee1_T | 0.8 |
k_dstg | 0.015 |
j_astg | 0.05 |
k_stg_ | 0.2 |
k_stg__ | 2.0 |
k_outw | 0.01 |
j_awee | 0.05 |
k_dn_ | 0.01 |
k_inw | 0.04 |
k_astg_ | 0.0 |
j_istg | 0.05 |
k_dc_ | 0.01 |
k_ins | 0.08 |
k_out | 0.0 |
j_aie | 0.01 |
k_sxm | 0.0005 |
j_iwee | 0.05 |
k_wee_ | 0.005 |
k_dm_ | 0.002 |
k_dm__ | 0.2 |
k_dn__ | 1.5 |
k_iwee_ | 0.01 |
k_aie | 1.0 |
k_ifz | 0.2 |
epsilon | 7.0e-5 |
k_outs | 0.02 |
k_sxp | 0.001 |
k_iie | 0.4 |
j_ifz | 0.01 |
k_afz | 1.0 |
States:
Name | Description |
---|---|
Stg_n(time) | 0.0 |
preMPF_n(time) | 0.0 |
StgP_n(time) | 0.0 |
Stg_m(time) | 1.0 |
IE(time) | 0.0 |
N(time) | 1.0 |
preMPF_c(time) | 0.0 |
FZY(time) | 0.0 |
Wee1_c(time) | 0.0 |
MPF_c(time) | 1.0 |
StgP_c(time) | 0.0 |
Xp(time) | 0.0 |
Wee1P_n(time) | 0.0 |
Wee1_n(time) | 0.0 |
Xm(time) | 0.0 |
Stg_c(time) | 1.0 |
MPF_n(time) | 0.0 |
campbell_chandra_2006
— v0.0.1Campbell, Chandra, 2006
Details
Parameters:
Name | Description |
---|---|
f | 1.0 |
g | 1.0 |
L_0 | 2.12 |
k_off | 1.0 |
alpha | 0.1 |
epsilon | 1.0 |
x_0 | 1.0 |
k_a | 0.0 |
k_on | 1.0 |
beta | 2.0 |
States:
Name | Description |
---|---|
R_on(time) | 1.0 |
A(time) | 0.0 |
x(time) | 1.0 |
L(time) | 2.12 |
cardenas_1996
— v0.0.1The Glucose-induced Switch Between Glycogen Phosphorylase and Glycogen Synthase in the Liver: Outlines of a Theoretical Approach
Details
The glucose-induced switch between glycogen phosphorylase and glycogen synthase in the liver is investigated by means of a theoretical approach based on a minimal, bicyclic cascade model involving the reversible phosphorylation of the two enzymes. The aim of the analysis is to evaluate the contribution of different factors to the sequential changes in the activity of glycogen phosphorylase and glycogen synthase observed following the addition of suprathreshold amounts of glucose.
Parameters:
Name | Description |
---|---|
V_4 | 0.2 |
K_a4 | 0.5 |
alpha | 9.0 |
K_a3 | 0.5 |
GLC | 32.5 |
K_a2 | 10.0 |
V_M2 | 0.22 |
G6P | 0.4 |
beta | 9.0 |
K_3 | 0.4 |
K_1 | 0.1 |
V_M3 | 0.05 |
V_1 | 1.25 |
K_a1 | 10.0 |
K_4 | 0.4 |
K_2 | 0.2 |
k6 | 0.03 |
k5 | 2.75 |
States:
Name | Description |
---|---|
G6P(time) | 0.1 |
GLC(time) | 5.0 |
GSa(time) | 0.02 |
Pha(time) | 0.845 |
cardiovascular_circulation_dvad
— v0.0.1Cardiovascular Circulation DVad
Details
cardiovascular_circulation_ivad
— v0.0.1Cardiovascular Circulation IVad
Details
cardiovascular_circulation_systemic
— v0.0.1Cardiovascular Circulation Systemic
Details
Parameters:
Name | Description |
---|---|
T | 1.0 |
C | 20.5 |
Ts2 | 0.45 |
Vlv0 | 500.0 |
L | 0.0017 |
P0 | 0.0 |
PlvIni | 1.0 |
Emax | 2.5 |
ElvMin | 0.1 |
CVmi | 400.0 |
Emin | 0.1 |
P0sat | 100.0 |
Q0sat | 0.0 |
Rsat | 0.05 |
V0 | 20.0 |
CV | 400.0 |
ElaMin | 0.15 |
ElvMax | 2.5 |
Vini | 4.0 |
VlvIni | 5.0 |
Csvn | 20.5 |
Csat | 1.6 |
Pini | 1.0 |
CVao | 350.0 |
Ts1 | 0.3 |
Lsas | 6.2e-5 |
Csas | 0.08 |
Rscp | 0.52 |
VlaIni | 4.0 |
Rsas | 0.003 |
Rsar | 0.5 |
Tpww | 0.09 |
Vla0 | 20.0 |
ElaMax | 0.25 |
P0svn | 0.0 |
Tpwb | 0.92 |
Q0 | 0.0 |
Rsvn | 0.075 |
P0sas | 100.0 |
PlaIni | 1.0 |
Q0sas | 0.0 |
R | 0.5 |
Lsat | 0.0017 |
States:
Name | Description |
---|---|
Pi(t) | 0.0 |
Qo(t) | 0.0 |
V(t) | 20.0 |
cardiovascular_circulation_westkessel
— v0.0.1Cardiovascular Circulation Westkessel
Details
cartwright_husain_1986
— v0.0.1Cartwright, Husain, 1986
Details
Parameters:
Name | Description |
---|---|
dR | 0.1 |
dT | 0.023 |
T_ | 8.0 |
L_ | 30.0 |
rL | 5.0 |
dL | 0.015 |
rR | 0.1 |
rT | 0.01 |
States:
Name | Description |
---|---|
T(time) | 12.0 |
R(time) | 0.0 |
L(time) | 10.0 |
chang_fujita_1999
— v0.0.1Chang, Fujita, 1999
Details
Parameters:
Name | Description |
---|---|
k14 | 1.065e6 |
k20 | 218.0 |
k21 | 100000.0 |
k10 | 418300.0 |
k9 | 100000.0 |
k13 | 100000.0 |
k18 | 100000.0 |
k25 | 100000.0 |
k15 | 100000.0 |
k26 | 31.92 |
k29 | 100000.0 |
k8 | 89400.0 |
k19 | 1000.0 |
k4 | 4.928e6 |
k22 | 418300.0 |
Na_ | 10.0 |
k6 | 1.065e6 |
Cl | 96.0 |
k11 | 100000.0 |
Na | 50.0 |
k12 | 4.982e6 |
k23 | 100000.0 |
k16 | 89400.0 |
D_ | 1.0e-6 |
D | 1.0e-6 |
k31 | 100000.0 |
k32 | 0.1166 |
k1 | 100000.0 |
Cl_ | 40.0 |
k27 | 100000.0 |
k28 | 138900.0 |
k3 | 100000.0 |
k7 | 100000.0 |
k17 | 458700.0 |
k30 | 0.3514 |
k5 | 100000.0 |
k2 | 418300.0 |
k24 | 31.92 |
States:
Name | Description |
---|---|
ENaD(time) | 0.08333 |
ENa(time) | 0.08333 |
ED_(time) | 0.08333 |
ENa_(time) | 0.08333 |
E_(time) | 0.08333 |
ENaD_(time) | 0.08333 |
ENaCl(time) | 0.08333 |
E(time) | 0.08333 |
ENaCl_(time) | 0.08333 |
ECl(time) | 0.08333 |
ED(time) | 0.08333 |
ECl_(time) | 0.08333 |
chang_fujita_2001
— v0.0.1Chang, Fujita, 2001
Details
Parameters:
Name | Description |
---|---|
psi | 1.0 |
k2 | 7.87e6 |
F | 96500.0 |
k10 | 92600.0 |
k9 | 514000.0 |
T | 310.0 |
KH | 1.0 |
HCO3 | 1.0 |
k8 | 8.28e6 |
k4 | 8.28e6 |
Ki_Cl | 0.528 |
k6 | 7.87e6 |
Na_ | 9.5 |
H | 1.0 |
k11 | 324000.0 |
H_ | 1.0 |
psi_ | -89.6 |
Na | 1.0 |
Cl | 1.0 |
k12 | 58300.0 |
k1 | 1.0e8 |
Cl_ | 1.0 |
k3 | 1.0e8 |
ATP_ | 1.0 |
HCO3_ | 1.0 |
NH4_ | 1.3 |
k7 | 1.0e8 |
Ki_HCO3 | 0.423 |
Pi_ | 1.0 |
k5 | 1.0e8 |
R | 8.314 |
ADP_ | 1.0 |
NH4 | 1.0 |
States:
Name | Description |
---|---|
ENH4(time) | nothing |
EHCO3_(time) | nothing |
ENa(time) | nothing |
EH_(time) | nothing |
ENa_(time) | nothing |
E_(time) | nothing |
EH(time) | nothing |
EH2(time) | nothing |
E(time) | nothing |
EH2_(time) | nothing |
EHCO3(time) | nothing |
ECl(time) | nothing |
ECl_(time) | nothing |
ENH4_(time) | nothing |
chang_fujita_b_1999
— v0.0.1Chang, Fujita, B, 1999
Details
Parameters:
Name | Description |
---|---|
RT | 2.579 |
L_mc_v | 5.22e-9 |
C_s_Imp | 0.04525 |
J_mc_NaCl_max | 3.21e-5 |
K_mc_K_KCl | 0.053 |
K_Na_ATPase | 0.012 |
K_mc_Cl_KCl | 0.0213 |
P_ms_Na | 4.8e-6 |
J_mc_KCl_max | 6.31e-8 |
C_c_Imp | 0.1124 |
P_ms_K | 4.8e-6 |
C_m_Imp | 0.1033 |
P_mc_Na | 3.27e-6 |
P_ms_Cl | 2.4e-6 |
P_mc_K | 4.9e-7 |
J_a_max | 2.69e-6 |
P_mc_Cl | 1.43e-6 |
L_ms_v | 0.0 |
P_sc_K | 0.000474 |
K_mc_Na_NaCl | 0.0511 |
psi_m | -28.0 |
L_sc_v | 5.22e-7 |
psi_c | -86.4 |
psi_s | 0.0 |
K_mc_Cl_NaCl | 0.0192 |
F | 96.48 |
P_sc_Cl | 9.16e-5 |
States:
Name | Description |
---|---|
C_m_Na(time) | 0.05 |
C_c_K(time) | 0.1637 |
C_c_Na(time) | 0.0164 |
C_m_K(time) | 0.002 |
C_s_Cl(time) | 0.112 |
C_c_Cl(time) | 0.0203 |
C_s_K(time) | 0.00425 |
C_s_Na(time) | 0.1438 |
C_m_Cl(time) | 0.03 |
chassagnole_rais_quentin_fell_mazat_2001
— v0.0.1Chassagnole, Rais, Quentin, Fell, Mazat, 2001
Details
Parameters:
Name | Description |
---|---|
K_hsp | 0.31 |
K_iLys | 9.45 |
h_Thr | 4.09 |
V_max_HK | 483.0 |
V_max_TS | 208.0 |
V_max_HDH | 2585.0 |
K_eq | 284000.0 |
K_Pi | 10.2 |
V_max_AK_III | 299.0 |
h | 1.41 |
K_ihs | 4.7 |
K_NADP | 0.144 |
V_max_AK_I | 463.0 |
K_iThr | 1.09 |
alpha | 2.47 |
K_aspp | 0.022 |
K_asp | 0.97 |
h_Lys | 2.8 |
K_ASA | 0.11 |
K_ATP | 0.072 |
K_ADP | 0.25 |
K_NADPH | 0.029 |
K_iATP | 4.35 |
V_max_ASD | 598.0 |
K_hs | 0.11 |
States:
Name | Description |
---|---|
Pi(time) | 0.0 |
hsp(time) | 0.0 |
ATP(time) | 30.0 |
Asp(time) | 10.0 |
ASA(time) | 0.0 |
NADPH(time) | 0.0 |
NADP(time) | 0.0 |
aspp(time) | 0.0 |
Thr(time) | 0.0 |
hs(time) | 0.0 |
Lys(time) | 0.0 |
ADP(time) | 0.0 |
chay_1997
— v0.0.1Chay, 1997
Details
Parameters:
Name | Description |
---|---|
g_NS | 5.0 |
lamda_h | 12.5 |
k_Ca | 7.0 |
T | 310.0 |
K_NS | 50.0 |
g_K_Ca | 5.0 |
Sh | -7.0 |
Sd | 5.0 |
Ca_o | 2500.0 |
V_K | -75.0 |
Vn | -18.0 |
lamda_n | 12.5 |
K_Ca | 1.0 |
omega | 0.2 |
V_Na | 80.0 |
Vm | -25.0 |
V_fast | 80.0 |
Cm | 1.0 |
VNS | -20.0 |
g_NaL | 0.3 |
P_Ca | 2.0 |
Vh | -48.0 |
g_fast | 600.0 |
k_rel | 0.2 |
Vd | -10.0 |
Sn | 14.0 |
lamda_d | 2.5 |
g_K_ATP | 2.0 |
g_K_dr | 600.0 |
Sm | 9.0 |
R | 8314.0 |
F | 96485.0 |
k_pump | 30.0 |
States:
Name | Description |
---|---|
d(time) | 0.0031711238 |
V(time) | -38.34146 |
n(time) | 0.1836403 |
h(time) | 0.214723 |
Ca_i(time) | 0.6959466 |
Ca_lum(time) | 102.686 |
chay_lee_fan_1995
— v0.0.1Chay, Lee, Fan, 1995
Details
Parameters:
Name | Description |
---|---|
kg | 0.005 |
ld | 250.0 |
G_total | 200.0 |
hd | 100.0 |
rho_kc | 90000.0 |
Ks | 300.0 |
hg | 0.0 |
rho_hc | 1.0 |
kp_ | 2.0e-7 |
KD | 25.0 |
PLC_total | 10.0 |
rho_lc | 200.0 |
hp_ | 0.5 |
kd_ | 700.0 |
States:
Name | Description |
---|---|
G_alpha_GDP(time) | nothing |
DAG(time) | nothing |
PLC_active(time) | nothing |
Ca_i(time) | nothing |
G_alpha_GTP(time) | nothing |
chen_calzone_csikasznagy_cross_novak_tyson_2004
— v0.0.1Chen, Calzone, Csikasznagy, Cross, Novak, Tyson, 2004
Details
Parameters:
Name | Description |
---|---|
ks_bud | 0.2 |
Ji_tem | 0.1 |
epsilon_sbf_n2 | 2.0 |
ks_n2__ | 0.15 |
epsilon_sbf_n3 | 10.0 |
ka_apc | 0.1 |
kd_b2__ | 0.4 |
kd_swi | 0.08 |
kas_esp | 50.0 |
kas_rent | 200.0 |
ki_mcm | 0.15 |
Ja_apc | 0.1 |
kdi_rentp | 2.0 |
kd_net | 0.03 |
epsilon_f6_k2 | 0.03 |
ks2_pds__ | 0.055 |
kd3_c1 | 1.0 |
Jspn | 0.14 |
kas_f5 | 0.01 |
Kez2 | 0.2 |
ks_b2__ | 0.04 |
C0 | 0.4 |
kd1_pds_ | 0.01 |
Ji_apc | 0.1 |
epsilon_c1_n2 | 0.06 |
epsilon_cdh_n2 | 0.4 |
epsilon_f6_n2 | 0.06 |
ks_20__ | 0.6 |
kd1_c1 | 0.01 |
Cdc15_T | 1.0 |
kg | 0.007702 |
ks_f6___ | 0.004 |
ka_15_ | 0.002 |
kd_b5__ | 0.16 |
kpp_c1 | 4.0 |
epsilon_c1_n3 | 0.3 |
ka_cdh_ | 0.01 |
J20_ppx | 0.15 |
ks_f6_ | 0.024 |
ks_c1_ | 0.012 |
ks_ori | 2.0 |
epsilon_ori_b5 | 0.9 |
Ja_tem | 0.1 |
epsilon_sbf_b5 | 2.0 |
epsilon_f6_b5 | 0.1 |
epsilon_bud_n2 | 0.25 |
kpp_f6 | 4.0 |
ks_swi__ | 0.08 |
ks_b2_ | 0.001 |
ks_swi_ | 0.005 |
ka_cdh__ | 0.8 |
ks_20_ | 0.006 |
kkp_net__ | 0.6 |
epsilon_cdh_b2 | 1.2 |
Tem1_T | 1.0 |
epsilon_bud_n3 | 0.05 |
kas_b2 | 50.0 |
kd_20 | 0.3 |
kd_n2 | 0.12 |
epsilon_c1_b2 | 0.45 |
ka_mcm | 1.0 |
ks_b5_ | 0.0008 |
ks1_pds__ | 0.03 |
Ji_mcm | 0.1 |
ka_20__ | 0.2 |
ks_cdh | 0.01 |
ks_net | 0.084 |
ks_c1__ | 0.12 |
epsilon_f6_n3 | 0.3 |
Ji_cdh | 0.03 |
ki_15 | 0.5 |
epsilon_c1_b5 | 0.1 |
ks_pds_ | 0.0 |
ka_swi | 2.0 |
kd_14 | 0.1 |
Jd2_f6 | 0.05 |
ka_sbf | 0.38 |
ki_cdh_ | 0.001 |
Esp1_T | 1.0 |
kas_b5 | 50.0 |
kas_rentp | 1.0 |
ki_sbf_ | 0.6 |
kd_ppx_ | 0.17 |
kd2_f6 | 1.0 |
kpp_net_ | 0.05 |
ki_sbf__ | 8.0 |
kd2_pds__ | 0.2 |
ki_apc | 0.15 |
epsilon_bud_b5 | 1.0 |
ks_n2_ | 0.0 |
Kez | 0.3 |
kd_ppx__ | 2.0 |
ks_spn | 0.1 |
kkp_net_ | 0.01 |
epsilon_cdh_b5 | 8.0 |
kdi_f2 | 0.5 |
kd3_pds__ | 0.04 |
kd_b5_ | 0.01 |
kdi_b5 | 0.06 |
kd1_f6 | 0.01 |
kd2_c1 | 1.0 |
kdi_f5 | 0.01 |
ka_15__ | 1.0 |
Ja_cdh | 0.03 |
Ji_sbf | 0.01 |
Jpds | 0.04 |
Jd2_c1 | 0.05 |
epsilon_c1_k2 | 0.03 |
epsilon_ori_b2 | 0.45 |
ki_cdh__ | 0.08 |
kd_ori | 0.06 |
Dn3 | 1.0 |
kpp_net__ | 3.0 |
Ja_sbf | 0.01 |
ki_swi | 0.05 |
ks_14 | 0.2 |
kd_spn | 0.06 |
kd_b2p | 0.15 |
kdi_b2 | 0.05 |
kas_f2 | 15.0 |
epsilon_f6_b2 | 0.55 |
Jn3 | 6.0 |
kd3_f6 | 1.0 |
kd_b2_ | 0.003 |
ka_20_ | 0.05 |
kd_cdh | 0.01 |
epsilon_cdh_n3 | 0.25 |
Ja_mcm | 0.1 |
kd_bud | 0.06 |
B0 | 0.054 |
ka_15___ | 0.001 |
ks_f6__ | 0.12 |
kdi_rent | 1.0 |
kdi_esp | 0.5 |
ks_b5__ | 0.005 |
ks_ppx | 0.1 |
States:
Name | Description |
---|---|
Swi5(time) | 0.9562 |
Clb5(time) | 0.0518 |
Cdc14_T(time) | 2.0 |
Cdh1_T(time) | 1.0 |
Net1(time) | 0.0186 |
Net1_T(time) | 2.8 |
Sic1P(time) | 0.0064 |
C2(time) | 0.2384 |
Cdh1(time) | 0.9305 |
Pds1(time) | 0.0256 |
C2P(time) | 0.024 |
Sic1(time) | 0.0229 |
F2P(time) | 0.0274 |
Swi5_T(time) | 0.9765 |
Cdc15(time) | 0.6565 |
F5(time) | 7.2e-5 |
mass(time) | 1.206 |
Cln2(time) | 0.0652 |
BUD(time) | 0.0085 |
C5P(time) | 0.0069 |
C5(time) | 0.0701 |
Cdc20_A(time) | 0.4443 |
Cdc6(time) | 0.1076 |
RENT(time) | 1.0495 |
APC_P(time) | 0.1015 |
SPN(time) | 0.0305 |
ORI(time) | 0.0009 |
PPX(time) | 0.1232 |
Clb2(time) | 0.1469 |
Esp1(time) | 0.3013 |
F5P(time) | 7.9e-6 |
Cdc6P(time) | 0.0155 |
Tem1(time) | 0.9039 |
F2(time) | 0.2361 |
Cdc20_T(time) | 1.9163 |
Cdc14(time) | 0.4683 |
chen_csikasz_nagy_gyorffy_val_novak_tyson_2000
— v0.0.1Chen, Csikasz-Nagy, Gyorffy, Val, Novak, Tyson, 2000
Details
chen_popel_2006
— v0.0.1Chen, Popel, 2006
Details
Parameters:
Name | Description |
---|---|
k14 | 53.9 |
O2 | 172.0 |
k_1 | 0.1 |
k_8 | 0.1 |
k10 | 3.33 |
k13 | 0.033 |
k9 | 11.4 |
k12 | 0.91 |
k_5 | 98.0 |
k_4 | 11.4 |
k1 | 0.1 |
k8 | 0.1 |
k_10 | 89.9 |
k4 | 1.89 |
k3 | 0.91 |
k7 | 0.91 |
k6 | 12.6 |
k_9 | 1.89 |
k5 | 2.58 |
k2 | 0.91 |
k11 | 29.4 |
States:
Name | Description |
---|---|
NOHA(time) | 0.0 |
Fe3_O2_NOHA(time) | 0.0 |
NO3(time) | 0.0 |
Fe3_NO(time) | 0.0 |
Fe3(time) | 0.045 |
citrulline(time) | 0.0 |
Fe3_Arg(time) | 0.0 |
Fe2_NOHA(time) | 0.0 |
NO(time) | 0.0 |
Arg(time) | 100.0 |
Fe2_Arg(time) | 0.0 |
Fe3_O2_Arg(time) | 0.0 |
Fe2_NO(time) | 0.0 |
Fe3_NOHA(time) | 0.0 |
Fe2(time) | 0.0 |
chen_popel_2007
— v0.0.1Chen, Popel, 2007
Details
cheng_brown_loeb_2000
— v0.0.1Cheng, Brown, Loeb, 2000
Details
Parameters:
Name | Description |
---|---|
c1 | 23.0 |
nf0 | 2.1 |
cv1 | 9.18 |
L_r1 | 1.17 |
L_r2 | 1.17 |
as2 | 0.96 |
nf1 | 3.3 |
T_f4 | 200.0 |
T_f2 | 0.1 |
LT_r | 0.964 |
as1 | 1.76 |
V_Y | 0.1 |
omega | 0.75 |
bv | 0.69 |
f_env | 1.0 |
nf | 1.0 |
mass | 0.005 |
T_f3 | 200.0 |
T_s | 43.0 |
L_max | 0.13 |
c_Y | 0.35 |
c2 | 23.0 |
av2 | 0.0 |
LT | 0.02 |
av0 | -1.53 |
eta | 0.001 |
k1 | 0.046 |
rho | 2.12 |
beta | 1.55 |
F_max | 23.0 |
av1 | 0.0 |
T_L | 0.088 |
T_f1 | 0.35 |
V_max | -9.15 |
cv0 | -5.7 |
af | 0.56 |
cT | 27.8 |
kT | 0.0047 |
T_Y | 200.0 |
k2 | 0.046 |
States:
Name | Description |
---|---|
f_int(time) | nothing |
f_eff(time) | nothing |
V(time) | nothing |
L_eff(time) | nothing |
Y(time) | nothing |
T_f(time) | nothing |
S(time) | nothing |
L(time) | nothing |
ciliberto_novak_tyson_2003
— v0.0.1Ciliberto, Novak, Tyson, 2003
Details
Parameters:
Name | Description |
---|---|
ks_bud | 0.1 |
ka_mcm | 1.0 |
Js_cdc20 | 0.3 |
IE_total | 1.0 |
Va_wee | 0.3 |
ki_sbf_2 | 2.0 |
khsl1 | 1.0 |
ka_cdc20 | 1.0 |
Ji_mcm | 0.1 |
kd_swe_1 | 0.007 |
Ja_wee | 0.05 |
Mih1_total | 1.0 |
kd_clb_1 | 0.015 |
ki_mcm | 0.15 |
ka_sbf_1 | 1.0 |
kd_sic_1 | 1.0 |
ks_clb | 0.015 |
Ja_ie | 0.01 |
kmih_1 | 5.0 |
Ji_cdh | 0.01 |
kswe_1 | 2.0 |
Mcm_total | 1.0 |
kd_swe_2 | 0.05 |
ks_cdc20_2 | 0.3 |
kd_cdc20 | 0.1 |
ki_cdh_1 | 2.0 |
kd_clb_2 | 1.0 |
ks_cdc20_1 | 0.005 |
ks_sweC | 0.0 |
Va_mih | 1.0 |
ki_cdc20 | 0.25 |
kd_clb_3 | 0.1 |
Ji_wee | 0.05 |
ka_ie | 0.1 |
epsilon | 0.5 |
ka_cdh_1 | 1.0 |
Ja_cdc20 | 0.001 |
Ji_ie | 0.01 |
kmih_2 | 0.5 |
kd_sic | 0.01 |
Vi_mih | 0.3 |
khsl1r | 0.01 |
Jm | 10.0 |
Ja_mih | 0.1 |
Ja_cdh | 0.01 |
ks_swe | 0.0025 |
kswe_3 | 0.2 |
mu | 0.005 |
Ji_mih | 0.1 |
Ji_sbf | 0.01 |
kdiss | 0.1 |
ka_sbf_2 | 0.0 |
Ja_sbf | 0.01 |
ka_cdh_2 | 10.0 |
Vi_wee | 1.0 |
Cdh1_total | 1.0 |
ki_sbf_1 | 1.0 |
SBF_total | 1.0 |
kd_cln | 0.1 |
ki_cdh | 35.0 |
Ji_cdc20 | 0.001 |
ki_ie | 0.04 |
Ja_mcm | 0.1 |
kd_bud | 0.1 |
kass | 300.0 |
kd_sic_2 | 3.0 |
kswe_2 | 0.01 |
ks_sic | 0.1 |
ks_cln | 0.1 |
States:
Name | Description |
---|---|
Mih1_a(time) | 0.808 |
PTrim(time) | 0.0 |
M(time) | 0.802 |
BE(time) | 0.0 |
Mcm_a(time) | 0.933 |
Swe1M(time) | 0.018 |
Sic1(time) | 0.003 |
Cln(time) | 0.054 |
Cdc20(time) | 1.172 |
Clb2(time) | 0.184 |
PSwe1(time) | 0.0 |
PClb2(time) | 0.0 |
Trim(time) | 0.084 |
Cdc20_a(time) | 1.438 |
Cdh1_a(time) | 0.993 |
Swe1(time) | 0.0 |
SBF_a(time) | 0.124 |
PSwe1M(time) | 0.013 |
IE_a(time) | 0.522 |
ciliberto_petrus_tyson_sible_2003
— v0.0.1Ciliberto, Petrus, Tyson, Sible, 2003
Details
Parameters:
Name | Description |
---|---|
koff | 0.0001 |
L | 0.4 |
kiinact | 0.6 |
kdissoc | 0.001 |
theta | 0.3 |
Jwact | 0.01 |
Jwinact | 0.01 |
kassoc | 0.1 |
Wee1_total | 8.0 |
kiact | 0.15 |
kwact | 0.75 |
kedeg | 0.017 |
k25A | 0.1 |
Deg | 0.0 |
kxdeg | 0.01 |
kwee | 1.5 |
Jiinact | 0.01 |
kdact | 0.023 |
kwinact | 1.5 |
epsilon | 0.001 |
kon | 0.02 |
Jiact | 0.01 |
n | 4.0 |
States:
Name | Description |
---|---|
Xic(time) | 3.0 |
PCdk2_CycErem(time) | 0.0 |
Xic_Cdk2_CycE(time) | 0.0 |
Xic_PCdk2_CycE(time) | 0.0 |
Cdk2_CycErem(time) | 0.0 |
Wee1_a(time) | 1.02 |
Kin_a(time) | 0.6 |
Cdk2_CycE(time) | 0.06 |
Xic_PCdk2_CycErem(time) | 0.0 |
Deg_a(time) | 0.0 |
Xic_Cdk2_CycErem(time) | 0.0 |
PCdk2_CycE(time) | 0.94 |
Xicrem(time) | 0.0 |
ciliberto_tyson_2000
— v0.0.1Ciliberto, Tyson, 2000
Details
Parameters:
Name | Description |
---|---|
Vwee | 0.025 |
Vwee_ | 2.5 |
Kmie | 0.01 |
k25 | 18.0 |
IEtot | 1.0 |
V2_ | 0.6 |
V25_ | 0.4 |
Cdc25tot | 1.0 |
Cdc2tot | 1.0 |
V2 | 0.01 |
kie | 4.5 |
kwr | 0.8 |
q | 1.0 |
s | 0.021 |
k25r | 0.8 |
Kmwr | 1.0 |
Kmap | 0.01 |
Kmw | 0.1 |
kier | 0.34 |
Kmier | 0.01 |
Km25r | 1.0 |
k1 | 0.024 |
kapr | 0.3 |
Km25 | 0.1 |
Wee1tot | 1.0 |
k3 | 1.15 |
kw | 18.0 |
Kmapr | 1.0 |
APCtot | 1.0 |
V25 | 0.04 |
R | 1.0 |
kap | 0.3 |
States:
Name | Description |
---|---|
Cdc25P(time) | 0.4844362 |
IEP(time) | 0.002287817 |
M(time) | 0.0142077 |
Y(time) | 0.01577552 |
APC_(time) | 0.5051103 |
preMPF(time) | 0.02541723 |
Wee1(time) | 0.5155638 |
clancy_rudy_2001
— v0.0.1Clancy, Rudy, 2001
Details
Parameters:
Name | Description |
---|---|
nicholsarea | 5.0e-5 |
preplength | 0.001 |
gamma_Cai | 1.0 |
gamma_Cao | 0.341 |
hATP | 2.0 |
stim_start | 3.0 |
Tn_max | 0.07 |
T | 310.0 |
P_Na | 6.75e-7 |
Km_Ca | 0.0006 |
PNaK | 0.01833 |
P_K | 1.93e-7 |
K_mup | 0.00092 |
G_rel_max | 60000.0 |
delta_Ca_ith | 0.00018 |
Ko | 4.5 |
gamma_Nao | 0.75 |
Logicthresh | 0.98 |
CMDN_max | 0.05 |
Cm | 0.001 |
c2 | 0.0001 |
mu_2 | 0.1 |
beta_in | 1077.0 |
tau_tr | 0.18 |
Ca_NSR_max | 15.0 |
alpha_in | 2172.0 |
kATP | 0.00025 |
c1 | 0.00025 |
i_Kr_factor | 1.0 |
stim_duration | 0.002 |
Cao | 1.8 |
g_Nab | 0.004 |
K_mpCa | 0.0005 |
gamma_Nai | 0.75 |
mu_1 | 0.002 |
stim_period | 1.0 |
stim_end | 9.0 |
kdKNa | 66.0 |
K_mCSQN | 0.8 |
K_mCMDN | 0.00238 |
radius | 0.00011 |
gamma_Ki | 0.75 |
K_m_ns_Ca | 0.0012 |
A_cap | 1.434e-7 |
i_K_ATP_on | 1.0 |
I_pCa | 1.15 |
I_NaK | 2.25 |
Nao | 132.0 |
ATPi | 3.0 |
K_mNai | 10.0 |
P_Ca | 0.00054 |
g_Na | 18.5 |
I_up | 8.75 |
g_Cab | 0.003016 |
g_Kp | 0.00552 |
stim_amplitude | -25.5 |
G_rel_overload | 4000.0 |
K_mrel | 0.0008 |
CSQN_max | 10.0 |
gamma_Ko | 0.75 |
nKNa | 2.8 |
g_CaT | 0.05 |
K_mTn | 0.0005 |
nATP | 0.24 |
K_mKo | 1.5 |
CSQNthresh | 0.7 |
gamma | 0.15 |
F | 96485.0 |
R | 8314.0 |
States:
Name | Description |
---|---|
OVRLDtrack3(time) | 0.0 |
P_C1(time) | 3.3836e-8 |
P_C3(time) | 4.9493e-6 |
Ca_NSR(time) | 1.558 |
OVRLDtrack2(time) | 0.0 |
P_C2(time) | 1.6778e-8 |
P_O(time) | 1.089e-10 |
f(time) | 0.99976 |
Cainfluxtrack(time) | 0.0 |
P_UC3(time) | 0.68280597 |
P_IF(time) | 4.017e-5 |
xs1(time) | 0.00445 |
APtrack2(time) | 0.0 |
P_LC1(time) | 7.0e-8 |
P_IS(time) | 1.846e-5 |
P_LO_Na(time) | 4.0e-8 |
P_O_Na(time) | 4.753e-8 |
xs2(time) | 0.00445 |
Nai(time) | 10.904 |
P_I(time) | 3.334e-11 |
APtrack(time) | 0.0 |
APtrack3(time) | 0.0 |
zdv(time) | 0.011614 |
d(time) | 3.2474e-6 |
g(time) | 0.99425 |
P_LC3(time) | 0.00187739 |
OVRLDtrack(time) | 0.0 |
P_UO_Na(time) | 3.17e-6 |
P_UC1(time) | 0.0001437 |
V(time) | -88.859 |
ydv(time) | 0.99998 |
P_LC2(time) | 1.946e-5 |
Ca_JSR(time) | 1.556 |
Ki(time) | 140.433 |
b(time) | 0.0009757 |
P_UC2(time) | 0.00721646 |
Cai(time) | 0.0001073 |
clancy_rudy_2002
— v0.0.1Clancy, Rudy, 2002
Details
Parameters:
Name | Description |
---|---|
nicholsarea | 5.0e-5 |
preplength | 0.001 |
gamma_Cai | 1.0 |
gamma_Cao | 0.341 |
hATP | 2.0 |
stim_start | 3.0 |
Tn_max | 0.07 |
T | 310.0 |
P_Na | 6.75e-7 |
Km_Ca | 0.0006 |
PNaK | 0.01833 |
P_K | 1.93e-7 |
K_mup | 0.00092 |
G_rel_max | 60000.0 |
delta_Ca_ith | 0.00018 |
Ko | 4.5 |
gamma_Nao | 0.75 |
Logicthresh | 0.98 |
CMDN_max | 0.05 |
Cm | 0.001 |
c2 | 0.0001 |
beta_in | 1077.0 |
tau_tr | 0.18 |
Ca_NSR_max | 15.0 |
alpha_in | 2172.0 |
kATP | 0.00025 |
c1 | 0.00025 |
stim_duration | 0.002 |
Cao | 1.8 |
g_Nab | 0.004 |
K_mpCa | 0.0005 |
gamma_Nai | 0.75 |
stim_period | 1.0 |
stim_end | 9.0 |
kdKNa | 66.0 |
K_mCSQN | 0.8 |
K_mCMDN | 0.00238 |
radius | 0.00011 |
gamma_Ki | 0.75 |
K_m_ns_Ca | 0.0012 |
A_cap | 1.434e-7 |
i_K_ATP_on | 1.0 |
I_pCa | 1.15 |
I_NaK | 2.25 |
Nao | 132.0 |
ATPi | 3.0 |
K_mNai | 10.0 |
P_Ca | 0.00054 |
g_Na | 23.5 |
I_up | 8.75 |
g_Cab | 0.003016 |
g_Kp | 0.00552 |
stim_amplitude | -50.0 |
G_rel_overload | 4000.0 |
K_mrel | 0.0008 |
CSQN_max | 10.0 |
gamma_Ko | 0.75 |
nKNa | 2.8 |
g_CaT | 0.05 |
K_mTn | 0.0005 |
nATP | 0.24 |
K_mKo | 1.5 |
CSQNthresh | 0.7 |
gamma | 0.15 |
F | 96485.0 |
R | 8314.0 |
States:
Name | Description |
---|---|
P_UIF(time) | 2.25e-10 |
OVRLDtrack3(time) | 0.0 |
Ca_NSR(time) | 1.645 |
OVRLDtrack2(time) | 0.0 |
P_O(time) | 1.064e-10 |
P_LO(time) | 4.37e-17 |
P_UC3(time) | 9.06e-6 |
P_UO(time) | 4.15e-13 |
P_O_Na(time) | 3.491e-13 |
Nai(time) | 11.544 |
APtrack(time) | 0.0 |
g(time) | 0.9944 |
V(time) | -88.998 |
ydv(time) | 0.99998 |
P_UIM2(time) | 1.075e-12 |
b(time) | 0.000963 |
P_IC2(time) | 1.6e-8 |
P_UIM1(time) | 6.49e-11 |
Cai(time) | 0.000114 |
P_UIC3(time) | 3.778e-6 |
P_C1(time) | 3.341e-8 |
P_C3(time) | 4.95e-6 |
P_IM1(time) | 8.73e-12 |
P_C2(time) | 1.657e-8 |
f(time) | 0.9998 |
Cainfluxtrack(time) | 0.0 |
P_LC1(time) | 5.68e-14 |
P_IF(time) | 7.571e-11 |
xs1(time) | 0.00441 |
APtrack2(time) | 0.0 |
P_IC3(time) | 1.271e-6 |
xs2(time) | 0.00441 |
P_I(time) | 3.246e-11 |
APtrack3(time) | 0.0 |
P_LC3(time) | 9.535e-10 |
zdv(time) | 0.01152 |
d(time) | 3.176e-6 |
P_UIC2(time) | 4.758e-8 |
OVRLDtrack(time) | 0.0 |
P_UC1(time) | 5.399e-10 |
P_LC2(time) | 1.2e-11 |
Ca_JSR(time) | 1.643 |
Ki(time) | 140.275 |
P_UC2(time) | 1.14e-7 |
P_IM2(time) | 5.326e-14 |
cloutier_2009
— v0.0.1Cloutier 2009
Details
Parameters:
Name | Description |
---|---|
stim | 1.0 |
Vmaxf_n_pgi | 0.5 |
Sm_g | 10500.0 |
PCrg_tot | 5.0 |
Vmax_g_ATPase | 0.035657 |
kn_pgk | 0.4287 |
kfn_ck | 0.0524681 |
Vmaxr_n_pgi | 0.45 |
Vm_cg_GLC | 0.0098394 |
Vmax_n_ATPase | 0.04889 |
Vmax_g_hk | 0.050461 |
dHb0 | 0.064 |
Km_ADP | 0.00107 |
Vm | -70.0 |
NAe | 150.0 |
Vm_ec_LAC | 0.0325 |
kpump | 3.17e-7 |
Rcg | 0.022 |
R_GLU_NA | 0.075 |
Rce | 0.0275 |
Km_ec_LAC | 0.764818 |
Km_GLY | 1.0 |
PCrn_tot | 5.0 |
Ren | 0.4444444444444444 |
k3 | 0.43 |
krn_ldh | 0.1046 |
to | 200.0 |
aATP_mito | 5.0 |
Vg | 0.25 |
Vmax_glyp | 4.922e-5 |
tv | 35.0 |
Vmax_n_hk | 0.0513 |
Vmax_g_mito | 0.008454 |
Vmax_glys | 0.0001528 |
KO1 | 1.0 |
Vm_eg_GLC | 0.038089 |
tend | 300.0 |
PScapg | 0.2457 |
sr | 4.59186 |
Km_F6P_pfk | 0.18 |
krg_ldh | 0.54682 |
kn_pk | 28.6 |
v2_n | 2.55 |
Km_G6P_glys | 0.5 |
krn_ck | 0.015 |
gg_NA | 0.00325 |
Km_O2 | 0.0029658 |
Km_eg_GLC | 3.53 |
Vmax_ge_LAC | 0.086124 |
kn_pfk | 0.55783 |
Km_ne_LAC | 0.09314 |
kfg_ck | 0.0243 |
t1 | 2.0 |
Vmax_ne_LAC | 0.1978 |
tend_GLY | 440.0 |
CBF0 | 0.012 |
Rng | 1.8 |
qak | 0.92 |
Ki_ATP | 0.7595 |
nh_O2 | 2.7 |
Km_G6P | 0.5 |
GLCa | 4.8 |
F | 96500.0 |
HbOP | 8.6 |
k2 | 0.46 |
deltaf | 0.42 |
Vmax_g_gs | 0.3 |
kfg_ldh | 6.2613 |
v1_n | 0.041 |
Km_cg_GLC | 9.92 |
Km_pump | 0.4243 |
sr_GLY | 4.0 |
Km_F6P_pgi | 0.06 |
Vn | 0.45 |
Vmax_eg_GLU | 0.0208 |
kg_pfk | 0.403 |
t_n_stim | 2.0 |
Vmax_gc_LAC | 0.00021856 |
GLY_inh | 4.2 |
Vmax_n_mito | 0.05557 |
Km_gc_LAC | 0.12862 |
nH | 4.0 |
ATPtot | 2.379 |
Vv0 | 0.0236 |
Vmaxf_g_pgi | 0.5 |
to_GLY | 83.0 |
Km_ATP | 0.01532 |
Km_en_GLC | 5.32 |
KO2 | 1.0 |
RT | 2.57734e6 |
aGLY_inh | 20.0 |
Vm_en_GLC | 0.50417 |
kg_pgk | 0.2514 |
Vm_ce_GLC | 0.0489 |
PScapn | 0.2202 |
Vmaxr_g_pgi | 0.45 |
Km_PYR | 0.0632 |
aG6P_inh_hk | 20.0 |
Km_ge_LAC | 0.22163 |
NADH_g_tot | 0.22 |
Rcn | 0.01222 |
KO3 | 1.0 |
G6P_inh_hk | 0.6 |
Km_GLC | 0.105 |
NADH_n_tot | 0.22 |
NAero | 3.0 |
krg_ck | 0.02073 |
Reg | 0.8 |
Vc | 0.0055 |
CO2a | 1.2 |
O2a | 8.34 |
Sm_n | 40500.0 |
gn_NA | 0.0039 |
Ko2 | 0.089733 |
rATP_mito | 20.0 |
LACa | 0.313 |
k1 | 2.22 |
nOP | 15.0 |
delta_GLY | 62.0 |
kfn_ldh | 5.3 |
Km_GLU | 0.05 |
kg_pk | 2.73 |
Km_ce_GLC | 8.4568 |
States:
Name | Description |
---|---|
CO2c(time) | 2.12 |
PEPg(time) | 0.0254 |
GLUe(time) | 0.0 |
LACg(time) | 0.4651 |
PYRn(time) | 0.0388 |
O2g(time) | 0.1589 |
ATPg(time) | 2.24 |
GLUg(time) | 0.0 |
G6Pn(time) | 0.7275 |
ATPn(time) | 2.2592 |
GLCg(time) | 0.1656 |
F6Pn(time) | 0.1091 |
GLUn(time) | 3.0 |
GLCe(time) | 0.3339 |
NAg(time) | 13.36 |
G6Pg(time) | 0.7326 |
PEPn(time) | 0.0037 |
PYRg(time) | 0.1711 |
GLYg(time) | 2.5 |
GLCc(time) | 4.6401 |
Vv(time) | 0.0237 |
GAPn(time) | 0.0418 |
O2n(time) | 0.0975 |
LACe(time) | 0.3986 |
GAPg(time) | 0.0698 |
dHb(time) | 0.0218 |
F6Pg(time) | 0.1116 |
LACc(time) | 0.3251 |
O2c(time) | 7.4201 |
LACn(time) | 0.3856 |
NADHn(time) | 0.0319 |
NADHg(time) | 0.0445 |
GLCn(time) | 0.2633 |
NAn(time) | 15.533 |
PCrn(time) | 4.2529 |
PCrg(time) | 4.6817 |
cloutier_wellstead_2009
— v0.0.1Cloutier Wellstead 2009
Details
Parameters:
Name | Description |
---|---|
Vlac_0 | 0.355 |
stim | 1.0 |
Vmaxf_pfk2 | 0.0002 |
Km_ATP_hk | 0.5 |
Km_ADP_op | 0.005 |
nh_amp | 2.0 |
Ka_AMP | 0.05 |
Vmax_op | 1.0 |
v1_n | 0.5 |
tend | 200.0 |
Km_ATP_pfk | 0.05 |
kr_ck | 1.26 |
ANP | 2.51 |
Vmaxr_pfk2 | 0.0001036 |
kf_ck | 3.0 |
Km_F6P_pfk | 0.18 |
v2_n | 0.0 |
Km_ATP_pfk2 | 0.05 |
Km_PYR_op | 0.5 |
Q_adk | 0.92 |
Vmax_ATPase | 0.9355 |
t_n_stim | 2.0 |
Kamp_pfk2 | 0.005 |
Km_F6P_pfk2 | 0.01 |
Vmax_hk | 2.5 |
KI_F6P | 0.068 |
K_LAC | 0.641 |
Vmax_pfk | 3.85 |
Km_F26P_pfk | 0.01 |
Km_ADP_pk | 0.005 |
nAMP | 0.5 |
Km_F26P_pfk2 | 0.0001 |
Km_GAP_pk | 0.4 |
Vmax_pk | 5.0 |
kr_ldh | 2.5355 |
K_LAC_eff | 0.71 |
nATP | 0.4 |
kf_ldh | 12.5 |
to | 50.0 |
KI_ATP | 1.0 |
Km_ATP | 0.5 |
PCrtot | 20.0 |
States:
Name | Description |
---|---|
GAP(time) | 0.0405 |
F6P(time) | 0.2 |
LAC(time) | 0.5 |
PCr(time) | 18.14 |
PYR(time) | 0.1 |
F26P(time) | 0.001 |
ATP(time) | 2.402 |
colegrove_albrecht_friel_2000
— v0.0.1Colegrove, Albrecht, Friel, 2000
Details
Parameters:
Name | Description |
---|---|
EC50_extru | 378.8 |
n_extru | 1.8 |
k_leak | 3.7e-7 |
Ca_o | 0.002 |
k_inhib | 500.0 |
kuni_max | 75.9 |
Vmax_NaCa | -35.0 |
gamma | 2.0 |
EC50_uni | 10.0 |
n_uni | 2.0 |
Vmax_extru | 28.3 |
n_inhib | 6.0 |
EC50_NaCa | 307.0 |
States:
Name | Description |
---|---|
Ca_m(time) | 5.0e-8 |
Ca_i(time) | 0.002 |
conradie_bruggeman_ciliberto_csikasz_nagy_novak_westerhoff_snoep_2010
— v0.0.1Conradie, Bruggeman, Ciliberto, Csikasz-Nagy, Novak, Westerhoff and Snoep, 2010
Details
cooling_hunter_crampin_2007
— v0.0.1Cooling, Hunter, Crampin, 2007
Details
Parameters:
Name | Description |
---|---|
kf2 | 0.000275 |
kf16 | 1.25 |
kf13 | 6.0 |
PIP2 | 4000.0 |
kf4 | 0.3 |
kf9 | 0.0042 |
Ls | 0.1 |
kf15 | 3.8 |
Km14 | 19.8 |
Kd2 | 27500.0 |
ts | 10.0 |
kf3 | 1.0 |
kf14 | 0.444 |
kf1 | 0.0003 |
kf6 | 1.0 |
Kd1 | 3.0e-5 |
Vc | 2550.0 |
Kd11 | 0.1 |
Kd4 | 3.0e-5 |
kf10 | 0.042 |
kf12 | 6.0 |
kf7 | 0.15 |
kf5 | 0.0004 |
Km15 | 5.0 |
kr10 | 1.0 |
Rpc | 4.61 |
kr9 | 1.0 |
kr8 | 0.0167 |
kf11 | 0.0334 |
kr3 | 0.001 |
kf8 | 0.0167 |
States:
Name | Description |
---|---|
Pc(t) | 9.09 |
Gd(t) | 10000.0 |
Rlgp(t) | 0.0 |
Ca(t) | 0.1 |
Rg(t) | 5.06 |
R(t) | 13.9 |
Pcg(t) | 0.0 |
P(t) | 90.9 |
Rlg(t) | 0.0 |
Rl(t) | 0.0 |
Pg(t) | 0.0 |
IP3(t) | 0.015 |
Gt(t) | 0.0 |
cooling_hunter_crampin_CellML_2008
— v0.0.1Cooling, Hunter, Crampin, Cellml, 2008
Details
Parameters:
Name | Description |
---|---|
kf2 | 3.8 |
kr2 | 1.0 |
PIP2 | 4000.0 |
kf4 | 0.3 |
Kd4 | 3.0e-5 |
Ls | 0.1 |
Kd2 | 27500.0 |
ts | 10.0 |
kf3 | 1.0 |
kf5 | 0.0004 |
kf1 | 0.444 |
Km1 | 19.8 |
kf6 | 1.0 |
Rpc | 4.61 |
kr1 | 0.0167 |
Vc | 2550.0 |
Kd1 | 3.0e-5 |
Km2 | 5.0 |
kr3 | 0.001 |
States:
Name | Description |
---|---|
Pc(t) | 9.09 |
Gd(t) | 10000.0 |
Rlgp(t) | 0.0 |
Ca(t) | 0.1 |
Rg(t) | 5.06 |
R(t) | 13.9 |
Pcg(t) | 0.0 |
P(t) | 90.9 |
Rlg(t) | 0.0 |
Rl(t) | 0.0 |
Pg(t) | 0.0 |
IP3(t) | 0.015 |
Gt(t) | 0.0 |
corrias_buist_2007
— v0.0.1Corrias, Buist, 2007
Details
Parameters:
Name | Description |
---|---|
J_max_CaSR | 0.31705 |
Na_o | 137.0 |
K_i | 164.0 |
T | 310.0 |
Q10K | 1.365 |
Cm_SM | 77.0 |
G_max_ka_SM | 9.0 |
Q10Na | 2.45 |
G_max_Ltype | 65.0 |
Ca_o | 2.5 |
G_max_Na_SM | 3.0 |
G_max_kr_SM | 35.0 |
T_exp | 297.0 |
G_max_bk | 0.0144 |
Vol_SM | 3500.0 |
E_NSCC | -28.0 |
t_ICCpeak | 98.0 |
period | 20000.0 |
delta_VICC | 59.0 |
K_o | 5.9 |
Q10Ca | 2.1 |
G_max_LVA | 0.18 |
Ach | 1.0e-5 |
V_decay | 37.25 |
G_max_BK | 45.7 |
Gcouple | 1.3 |
t_ICCplateau | 7582.0 |
t_ICC_stimulus | 10000.0 |
Cl_o | 134.0 |
R | 8314.4 |
G_max_NSCC_SM | 50.0 |
F | 96486.0 |
Na_i | 10.0 |
States:
Name | Description |
---|---|
d_Ltype_SM(time) | 0.0 |
h_Na_SM(time) | 0.05787 |
f_ca_Ltype_SM(time) | 1.0 |
m_Na_SM(time) | 0.005 |
xa1_SM(time) | 0.00414 |
f_LVA_SM(time) | 0.99 |
Vm_SM(time) | -69.75 |
xr2_SM(time) | 0.82 |
m_NSCC_SM(time) | 0.0 |
xa2_SM(time) | 0.72 |
f_Ltype_SM(time) | 0.95 |
Ca_i(time) | 8.0e-5 |
d_LVA_SM(time) | 0.02 |
xr1_SM(time) | 0.0 |
corrias_buist_2008
— v0.0.1Corrias, Buist, 2008
Details
CorriasPurkinje
— v0.0.1Model of a rabbit Purkinje cell
Details
This workspace contains information regarding the model of a rabbit Purkinje cell published as:
Corrias A., Giles W., Rodriguez B "Ionic mechanisms of electrophysiological properties and repolarization abnormalities in rabbit Purkinje fibers" American Journal of Physiology (Heart and Circulatory Physiology).
Here you can find a CellML file that can be supplied to openCell for running the model in isolation as well as to Chaste (April, 2011 release) for incorporating the model into mono/bidomain simulations.
Parameters:
Name | Description |
---|---|
T | 310.0 |
stim_start | 700.0 |
tau_x_to_fast | 5.0 |
G_max_Ltype | 5.4 |
G_max_k1 | 20.0 |
tau_x_Ttype | 1.0 |
tau_x_na_late | 15.0 |
SERCA_max | 120.0 |
d_NaCa | 0.001 |
Krel | 0.001 |
G_max_kb | 0.01 |
DIFF_max | 5000.0 |
G_max_cab | 0.0001 |
G_max_ks | 3.0 |
g_nak | 442.2 |
Cm | 69.0 |
G_max_na_late | 2.0 |
periphery_fraction | 0.2 |
g_NaCa | 0.001 |
G_max_kr | 1.5 |
bulk_fraction | 0.6 |
tau_x_Ltype | 0.7 |
G_f_na | 0.045290323 |
tau_y_na_fast | 2.0 |
Na_o | 140.0 |
stim_duration | 0.5 |
Kpmca | 0.0001 |
n_NaCa | 3.0 |
Cao | 2.0 |
G_max_Ttype | 0.9 |
Ca_o | 2.0 |
sr_fraction | 0.06 |
G_f_k | 0.188709677 |
tau_x_na_fast | 0.005 |
stim_period | 500.0 |
stim_end | 9.0e6 |
G_max_to_fast | 10.0 |
PMCA_max | 5.0 |
REL_max | 2500.0 |
K_o | 5.4 |
tau_y_to_fast | 350.0 |
G_max_to_sustained | 3.0 |
H | 1.6 |
Nao | 140.0 |
LEAK_max | 10.0 |
Kmr | 1.7 |
stim_amplitude | -4320.0 |
Kmf | 0.000246 |
G_max_nab | 0.01 |
G_max_na_fast | 1140.0 |
gamma | 0.5 |
cell_volume | 13266.5 |
Hpmca | 1.5 |
R | 8314.472 |
F | 96485.3415 |
States:
Name | Description |
---|---|
y_ks(time) | 0.0 |
y_Ttype(time) | 0.01 |
y_Ltype(time) | 0.1 |
y_gate_f_na(time) | 0.011099 |
y_kr(time) | 0.25 |
Ca_i_peripheral(time) | 1.0e-5 |
x_Ttype(time) | 0.001337 |
Ca_i_bulk(time) | 3.2e-5 |
y_na_fast(time) | 0.978861 |
Ca_sr(time) | 0.17 |
Na_i(time) | 6.7 |
x_na_fast(time) | 7.0e-6 |
y_ca_Ltype(time) | 0.7 |
K_i(time) | 140.0 |
x_ks(time) | 1.0 |
x_to_fast(time) | 0.0 |
y_na_late(time) | 0.864489 |
Vm(time) | -88.34 |
y_to_fast(time) | 0.7 |
x_Ltype(time) | 3.0e-6 |
y_gate_f_k(time) | 0.011099 |
x_na_late(time) | 1.2e-5 |
cortassa_ECME_2006
— v0.0.1Cortassa et al (2006) ECME model
Details
An attempt to create a validated CellML implementation of the Cortassa et al (2006) excitation-contraction coupled with mitochondrial energetics ECME model from Biophys J.
cortassa_aon_marban_winslow_orourke_2003
— v0.0.1Cortassa, Aon, Marban, Winslow, Orourke, 2003
Details
Parameters:
Name | Description |
---|---|
Na_i | 10.0 |
na | 2.8 |
Km_MAL | 1.493 |
Kcat_CS | 3.2 |
kh1 | 1.13e-5 |
kh2 | 26.7 |
stim_start | 0.0 |
Kh_2 | 5.98e-5 |
delta_psi_0 | 0.091 |
KNa | 9.4 |
Kres | 1.35e18 |
Kres_F | 5.765e13 |
Kcat_SDH | 1.0 |
delta_psi_B | 0.05 |
Km_NAD | 38.7 |
Ka_ADP | 0.062 |
pc2 | 4.585e-14 |
ATP_i | 6.5 |
Ki_FUM | 1.3 |
Kd_Ca | 1.27 |
Ki_NADH | 0.19 |
Vmax_NaCa | 0.005 |
r2 | 1.728e-9 |
pc1 | 9.651e-14 |
rho_F1 | 0.06 |
GLU | 20.0 |
p1 | 1.346e-8 |
kh4 | 5.62e-6 |
Kd_Mg | 0.0308 |
Kcat_IDH | 1.94 |
p3 | 6.65e-15 |
ET_CS | 0.4 |
b | 0.5 |
KE_ACO | 2.22 |
pulse_value | 1.0 |
KCa | 0.375 |
Kh_1 | 8.1e-5 |
kf_FH | 0.83 |
K_trans | 19.0 |
H | 2.5e-5 |
r3 | 1.059e-26 |
CoA | 0.02 |
Vmax_uni | 0.000625 |
n_alpha_KG | 1.2 |
ET_MDH | 0.154 |
kf_AAT | 0.644 |
K_act | 0.38 |
r1 | 2.077e-18 |
ni | 1.0 |
ET_IDH | 0.109 |
rc1 | 2.656e-19 |
Ka_Ca | 1.41 |
KF1 | 1.71e6 |
F | 96480.0 |
n | 3.0 |
Mg | 0.4 |
f | 0.0003 |
T | 310.16 |
ET_SDH | 0.5 |
gH | 0.01 |
L | 110.0 |
pb | 3.373e-7 |
Kcat_MDH | 27.75 |
AcCoA | 0.0002 |
Km_AcCoA | 0.0126 |
Cm | 15.0 |
pa | 1.656e-5 |
g | 0.85 |
ET_KGDH | 0.5 |
FADH2 | 1.24 |
Ke_SL | 3.115 |
Ki_OAA | 0.0031 |
rc2 | 8.632e-27 |
p2 | 7.739e-7 |
Km_ISOC | 1.52 |
stim_duration | 0.4 |
delta_pH | -0.6 |
Km_OAA | 0.00064 |
kh3 | 6.68e-9 |
k_offset | 0.0399 |
Vmax_ANT | 0.05 |
kf_SL | 0.127 |
h | 0.5 |
Ke_FH | 1.0 |
rho_res_F | 0.0045 |
stim_end | 10000.0 |
Kcat_KGDH | 0.15 |
Ke_AAT | 6.6 |
C_Kint | 1.0 |
Kf_ACO | 12.5 |
ra | 6.394e-10 |
rho_res | 0.0006 |
Km_alpha_KG | 1.94 |
Kisdh_OAA | 0.15 |
Km_Suc | 0.03 |
k_C_ASP | 0.01 |
C_mito | 1.812 |
FAD | 0.01 |
Pi | 20.0 |
R | 8.315 |
rb | 1.762e-13 |
C_PN | 10.0 |
States:
Name | Description |
---|---|
SCoA(time) | 0.01 |
Suc(time) | 0.01 |
Ca_m(time) | 0.01 |
OAA(time) | 0.01 |
alpha_KG(time) | 0.01 |
ASP(time) | 0.01 |
delta_psi_m(time) | 0.01 |
MAL(time) | 0.01 |
ISOC(time) | 0.01 |
ADP_m(time) | 0.1 |
FUM(time) | 0.01 |
NADH(time) | 0.01 |
cortassa_aon_winslow_orourke_2004
— v0.0.1Cortassa, Aon, Winslow, Orourke, 2004
Details
Parameters:
Name | Description |
---|---|
Na_i | 10.0 |
na | 2.8 |
Km_MAL | 1.493 |
stim_start | 0.0 |
kh1 | 1.13e-5 |
kh2 | 26.7 |
Kcat_CS | 3.2 |
Kh_2 | 5.98e-5 |
Kcc | 0.01 |
phi2_GPX | 0.5 |
NADPH | 1.0 |
delta_psi_0 | 0.091 |
delta_psi_bm | 0.004 |
k1_CAT | 17000.0 |
KNa | 9.4 |
Kres | 1.35e18 |
Kres_F | 5.765e13 |
Kcat_SDH | 1.0 |
ET_GR | 0.00127 |
delta_psi_B | 0.05 |
Km_NAD | 38.7 |
fr | 50.0 |
Ka_ADP | 0.062 |
pc2 | 4.585e-14 |
ATP_i | 6.5 |
Ki_FUM | 1.3 |
GT | 1.0 |
Kd_Ca | 1.27 |
Ki_NADH | 0.19 |
Ki_H2O2 | 0.5 |
Vmax_NaCa | 0.005 |
r2 | 1.728e-9 |
pc1 | 9.651e-14 |
rho_F1 | 0.06 |
GLU | 20.0 |
p1 | 1.346e-8 |
kh4 | 5.62e-6 |
Kd_Mg | 0.0308 |
Kcat_IDH | 1.94 |
p3 | 6.65e-15 |
ET_CS | 0.4 |
b | 0.5 |
KE_ACO | 2.22 |
pulse_value | 1.0 |
KCa | 0.375 |
Kh_1 | 8.1e-5 |
kappa | 70.0 |
K_trans | 19.0 |
kf_FH | 0.83 |
H | 2.5e-5 |
r3 | 1.059e-26 |
CoA | 0.02 |
Vmax_uni | 0.000625 |
phi1_GPX | 0.15 |
n_alpha_KG | 1.2 |
ET_MDH | 0.154 |
kf_AAT | 0.644 |
k1_SOD | 2.4e6 |
K_act | 0.38 |
r1 | 2.077e-18 |
ni | 1.0 |
ET_IDH | 0.109 |
Ka_Ca | 1.41 |
k5_SOD | 0.5 |
rc1 | 2.656e-19 |
Mg | 0.4 |
F | 96480.0 |
n | 3.0 |
KF1 | 1.71e6 |
f | 0.0003 |
KM_NADPH | 38.7 |
T | 310.16 |
ET_SDH | 0.5 |
gH | 0.01 |
ET_SOD | 0.0004 |
L | 110.0 |
k1_GR | 0.0308 |
ET_CAT | 0.001 |
pb | 3.373e-7 |
ET_GPX | 0.00141 |
KM_GSSG | 1.94 |
Kcat_MDH | 27.75 |
AcCoA | 0.0002 |
Km_AcCoA | 0.0126 |
Cm | 15.0 |
pa | 1.656e-5 |
g | 0.85 |
ET_KGDH | 0.5 |
FADH2 | 1.24 |
Ke_SL | 3.115 |
Ki_OAA | 0.0031 |
shunt | 0.05 |
GL | 0.0782 |
rc2 | 8.632e-27 |
p2 | 7.739e-7 |
Km_ISOC | 1.52 |
k3_SOD | 48000.0 |
stim_duration | 0.4 |
delta_pH | -0.6 |
Km_OAA | 0.00064 |
kh3 | 6.68e-9 |
k_offset | 0.0399 |
Vmax_ANT | 0.05 |
kf_SL | 0.127 |
a | 0.001 |
h | 0.5 |
Ke_FH | 1.0 |
Gmax | 7.82 |
stim_end | 10000.0 |
rho_res_F | 0.0045 |
Kcat_KGDH | 0.15 |
Kf_ACO | 12.5 |
C_Kint | 1.0 |
Ke_AAT | 6.6 |
ra | 6.394e-10 |
rho_res | 0.0006 |
Km_alpha_KG | 1.94 |
Kisdh_OAA | 0.15 |
Km_Suc | 0.03 |
j | 0.12 |
k_C_ASP | 0.01 |
Pi | 20.0 |
FAD | 0.01 |
C_mito | 1.812 |
R | 8.315 |
C_PN | 10.0 |
rb | 1.762e-13 |
States:
Name | Description |
---|---|
SCoA(time) | 0.01 |
Suc(time) | 0.01 |
O2_i(time) | 0.01 |
Ca_m(time) | 0.01 |
OAA(time) | 0.01 |
alpha_KG(time) | 0.01 |
ASP(time) | 0.01 |
delta_psi_m(time) | 0.01 |
O2_m(time) | 0.01 |
MAL(time) | 0.01 |
GSH(time) | 0.01 |
ISOC(time) | 0.01 |
ADP_m(time) | 0.1 |
H2O2(time) | 0.01 |
FUM(time) | 0.01 |
NADH(time) | 0.01 |
costa_holmes_mcculloch_2001
— v0.0.1Costa, Holmes, Mcculloch, 2001
Details
courtemanche_ramirez_nattel_1998
— v0.0.1Courtemanche, Ramirez, Nattel, 1998
Details
Parameters:
Name | Description |
---|---|
Km_TRPN | 0.0005 |
T | 310.0 |
TRPN_max | 0.07 |
stim_start | 50.0 |
K_rel | 30.0 |
Km_CSQN | 0.8 |
Ca_up_max | 15.0 |
K_sat | 0.1 |
i_NaK_max | 0.59933874 |
I_up_max | 0.005 |
g_to | 0.1652 |
CMDN_max | 0.05 |
Cm | 100.0 |
g_B_K | 0.0 |
Km_K_o | 1.5 |
Km_CMDN | 0.00238 |
K_mNa | 87.5 |
g_Ks | 0.12941176 |
g_K1 | 0.09 |
g_Ca_L | 0.12375 |
tau_tr | 180.0 |
g_Kr | 0.029411765 |
I_NaCa_max | 1600.0 |
K_mCa | 1.38 |
Na_o | 140.0 |
stim_duration | 2.0 |
K_up | 0.00092 |
g_B_Na | 0.0006744375 |
Ca_o | 1.8 |
V_cell | 20100.0 |
stim_period | 1000.0 |
stim_end | 50000.0 |
K_o | 5.4 |
i_CaP_max | 0.275 |
g_Na | 7.8 |
g_B_Ca | 0.001131 |
stim_amplitude | -2000.0 |
K_Q10 | 3.0 |
CSQN_max | 10.0 |
Km_Na_i | 10.0 |
gamma | 0.35 |
R | 8.3143 |
F | 96.4867 |
States:
Name | Description |
---|---|
d(time) | 0.0001367 |
oa(time) | 0.03043 |
oi(time) | 0.9992 |
Ca_rel(time) | 1.488 |
xr(time) | 3.296e-5 |
V(time) | -81.18 |
h(time) | 0.9649 |
v(time) | 1.0 |
xs(time) | 0.01869 |
ua(time) | 0.004966 |
f(time) | 0.9996 |
K_i(time) | 139.0 |
ui(time) | 0.9986 |
u(time) | 2.35e-112 |
f_Ca(time) | 0.7755 |
j(time) | 0.9775 |
m(time) | 0.002908 |
Ca_up(time) | 1.488 |
Ca_i(time) | 0.0001013 |
w(time) | 0.9992 |
Na_i(time) | 11.17 |
cronwright_rohwer_prior_2002
— v0.0.1Cronwright, Rohwer, Prior, 2002
Details
Parameters:
Name | Description |
---|---|
K_G3P | 1.2 |
K_NADH | 0.023 |
V | 18.0 |
K_Pi | 1.0 |
K_eq | 10000.0 |
K_ATP | 0.73 |
K_F16BP | 4.8 |
K_NAD | 0.93 |
K_ADP | 2.0 |
K_DHAP | 0.54 |
Vf | 36.0 |
States:
Name | Description |
---|---|
G3P(time) | 24.0 |
csilkasz_nagy_2006
— v0.0.1Csilkasz-Nagy 2006
Details
Parameters:
Name | Description |
---|---|
k_s20pp | 0.15 |
J_ih1 | 0.01 |
k_dbhpp | 2.0 |
k_assb | 0.0 |
k_itfp | 0.25 |
k_depp | 0.0 |
k_assa | 25.0 |
k_dib | 0.05 |
k_aweepp | 0.0 |
k_iwee | 1.0 |
k_itfppp | 0.0 |
k_diepp | 5.0 |
k_ih1app | 0.2 |
k_dipp | 0.1 |
k_diapp | 5.0 |
k_atfp | 0.0 |
J_itf | 0.01 |
J_aie | 0.01 |
J_iwee | 0.05 |
k_afb | 1.0 |
k_debpp | 0.5 |
k_25pp | 5.0 |
J_14di | 12.0 |
k_iweepp | 1.0 |
k_weepp | 0.2 |
J_afi | 88.0 |
k_asse | 50.0 |
J_awee | 0.05 |
k_dissa | 1.0 |
k_itfapp | 0.1 |
k_ih1pp | 0.35 |
J_iie | 0.01 |
k_sap | 0.0 |
k_itfbpp | 0.1 |
maxmass | 10000.0 |
CycD_0 | 0.05 |
k_ifb | 0.1 |
k_die | 0.0 |
J_aAPC | 0.1 |
k_asa | 50.0 |
J_a20 | 0.005 |
k_s20p | 0.0 |
k_ase | 0.0 |
k_ifip | 88.0 |
k_ih1bpp | 1.0 |
k_a20 | 0.5 |
k_deapp | 0.5 |
J_ifb | 0.1 |
k_aweep | 0.3 |
k_dbp | 0.005 |
k_sipp | 0.0 |
k_weep | 0.02 |
k_afi | 88.0 |
J_a25 | 0.1 |
k_dippp | 0.8 |
k_a25 | 0.0 |
J_afb | 0.1 |
k_itfpp | 8.0 |
k_ifibpp | 88.0 |
J_ifi | 88.0 |
n | 1.0 |
k_i25pp | 0.0 |
k_dbpp | 0.4 |
k_ifipp | 0.05 |
Cdh1_T | 1.0 |
k_atfpp | 1.5 |
k_i25p | 0.3 |
k_sep | 0.01 |
k_depppp | 0.0 |
k_atfepp | 0.5 |
k_deppp | 0.0 |
k_asb | 60.0 |
k_ih1epp | 0.1 |
J_iAPC | 0.1 |
k_25p | 0.01 |
k_dappp | 0.0 |
k_atfdpp | 3.0 |
k_sbpp | 0.03 |
k_ih1p | 0.0 |
k_iweep | 0.0 |
k_dia | 0.06 |
J_atf | 0.01 |
k_ah1pp | 3.5 |
k_ah1p | 0.18 |
k_dep | 0.01 |
k_atfppp | 0.38 |
k_sbp | 0.01 |
k_dapp | 2.0 |
J_20 | 1.0 |
J_ah1 | 0.01 |
k_dibpp | 5.0 |
k_aAPC | 0.1 |
k_dipppp | 0.12 |
k_a25pp | 1.0 |
J_i20 | 0.005 |
J_i25 | 0.1 |
k_dip | 0.8 |
k_ih1ppp | 0.1 |
mu | 0.004951 |
k_ih1pppp | 0.06 |
k_d20 | 0.15 |
APC_T | 1.0 |
k_disse | 1.0 |
k_a25p | 0.0 |
k_dbcpp | 0.1 |
k_iAPC | 0.15 |
k_sapp | 0.025 |
k_dbppp | 0.15 |
k_deepp | 0.1 |
k_atfpppp | 3.0 |
k_dap | 0.02 |
k_ih1dpp | 0.0 |
k_atfapp | 0.2 |
k_14di | 0.0 |
k_dippppp | 0.1 |
k_aie | 0.07 |
k_dissb | 0.0 |
n20 | 1.0 |
k_iie | 0.18 |
k_ih1ppppp | 0.005 |
k_didpp | 0.0 |
k_i20 | 0.25 |
k_sepp | 0.18 |
k_sip | 1.8 |
States:
Name | Description |
---|---|
Cdc20_i(time) | 0.01855352707207203 |
Cdc20_A(time) | 0.6605867147445679 |
actCycB(time) | 0.1903585940599442 |
actCycE(time) | 0.2092024385929108 |
pB(time) | 0.009814870543777943 |
Cdh1(time) | 0.9992357492446899 |
preMPF(time) | 0.01 |
Tri_A(time) | 0.01715379953384399 |
CKI(time) | 0.2954076826572418 |
actCycA(time) | 0.09450308233499527 |
Tri_E(time) | 0.3117263317108154 |
APCP(time) | 0.6716265678405762 |
CycE(time) | 0.07760512828826904 |
Tri_B(time) | 0.01 |
CycB(time) | 0.1668413728475571 |
CycA(time) | 0.00994044542312622 |
mass(time) | 1.174216866493225 |
pBCKI(time) | 0.0 |
BCKI(time) | 0.0 |
Cdc20_T(time) | 0.7702387571334839 |
cui_kaandorp_2006
— v0.0.1Cui, Kaandorp, 2006
Details
Parameters:
Name | Description |
---|---|
Kx | 500.0 |
f | 0.1 |
kc | 10.0 |
V3 | 10000.0 |
K2 | 0.1 |
kM_minus | 100.0 |
alpha | 0.006 |
Caex | 1.0 |
kN_minus | 5.0 |
K1 | 4.3 |
CaMtotal | 25.0 |
Vx | 1000.0 |
kN_plus | 5.0 |
kM_plus | 500.0 |
V1 | 30000.0 |
CaNtotal | 25.0 |
V2 | 100.0 |
N | 13.0 |
lamda | 5.0 |
K3 | 100.0 |
d | 0.4 |
States:
Name | Description |
---|---|
h(time) | 0.0 |
m(time) | 0.0 |
x(time) | 0.0 |
z(time) | 1.0e-8 |
cui_kaandorp_2008
— v0.0.1Cui, Kaandorp, 2008
Details
Parameters:
Name | Description |
---|---|
k14 | 0.5 |
k34 | 0.0552 |
k38 | 0.1 |
k18 | 0.1 |
k9 | 0.5 |
k25 | 0.15 |
k40 | 0.1 |
k29 | 0.4 |
k8 | 0.1 |
k39 | 0.1 |
k37 | 0.2 |
k12 | 0.1 |
k16 | 0.1 |
k31 | 0.1 |
k43 | 0.03 |
k32 | 0.05 |
k41 | 0.02 |
k33 | 0.114 |
k3 | 2760.0 |
k28 | 0.1 |
k42 | 0.03 |
Ca | 0.2 |
k17 | 0.1 |
k20 | 0.1 |
k21 | 0.15 |
k10 | 0.1 |
k13 | 0.5 |
k15 | 0.1 |
k35 | 0.15 |
k26 | 0.1 |
k19 | 0.5 |
k4 | 0.072 |
k22 | 0.15 |
k6 | 0.0567 |
t_half | 15.0 |
k11 | 0.1 |
k23 | 0.15 |
k1 | 5.0 |
k36 | 0.1 |
k27 | 0.4 |
k7 | 5.0 |
k30 | 0.1 |
k24 | 0.1 |
k2 | 100.0 |
k5 | 50.0 |
States:
Name | Description |
---|---|
CaMCa(time) | 7.88e-7 |
CaNc(time) | 0.91 |
MCIPp(time) | 0.00776 |
MCIPpp(time) | 0.0798 |
NFATpc_CaNc_star(time) | 8.15e-5 |
NFATpc(time) | 0.00494 |
MCIPp_GSK3betac(time) | 0.0011 |
MCIPp_CaNc_star(time) | 0.000107 |
NFATc(time) | 2.0e-5 |
GSK3betan(time) | 0.339 |
MCIP_BMK1(time) | 2.14e-5 |
CaNc_star(time) | 0.0275 |
CaNn(time) | 0.0057 |
P1433(time) | 0.708 |
NFATpn(time) | 8.01e-5 |
Comp2(time) | 0.283 |
NFATc_GSK3betac(time) | 1.36e-6 |
BMK1(time) | 0.012 |
CaNn_star(time) | 0.0568 |
NFATn_GSK3betan(time) | 8.46e-5 |
Comp1(time) | 0.00521 |
MCIPpp_CaNc_star(time) | 0.0011 |
GSK3betac(time) | 0.17 |
NFATn(time) | 0.000499 |
CaM(time) | 25.2 |
Comp3(time) | 0.014 |
MRNA(time) | 0.000333 |
NFATpn_CaNn_star(time) | 2.27e-6 |
MCIP(time) | 0.000215 |
cui_kaandorp_lloyd_2008
— v0.0.1Cui, Kaandorp, Lloyd, 2008
Details
Parameters:
Name | Description |
---|---|
k_1 | 0.9 |
k2c | 0.0037 |
r5 | 30000.0 |
td | 2700.0 |
k1a | 1.0 |
k1 | 0.025 |
k1b | 0.01253 |
k2b | 0.0002 |
r4 | 0.009 |
k2a | 5.0e-5 |
r1 | 273.0 |
r2 | 0.0003437 |
Zn | 1.0e-5 |
td0 | 1800.0 |
k_2 | 0.3 |
r6 | 0.01506 |
r3 | 4.41e10 |
k2 | 0.02 |
States:
Name | Description |
---|---|
Qz5(time) | 0.0 |
Rw(time) | 50.0 |
Mw(time) | 0.0 |
Px(time) | 50.0 |
Tp(time) | 10000.0 |
Zn(time) | 10000.0 |
Py1(time) | 0.0 |
Dw(time) | 4.0 |
Dz(time) | 2.0 |
Mz(time) | 0.0 |
Tp1(time) | 0.0 |
Qw2(time) | 0.0 |
Qz4(time) | 0.0 |
Px1(time) | 0.0 |
Qz3(time) | 0.0 |
Rz(time) | 100.0 |
Qz1(time) | 0.0 |
Qz2(time) | 0.0 |
Py(time) | 25.0 |
Qw1(time) | 0.0 |
curien_ravanel_dumas_2003
— v0.0.1Curien, Ravanel, Dumas, 2003
Details
D
dash_bassingthwaighte_2004
— v0.0.1Dash, Bassingthwaighte, 2004
Details
david_cumin_phd_model
— v0.0.1David Cumin PhD Model
Details
davies_2012
— v0.0.1Davies isAP 2012
Details
A modified version of the Hund-Rudy 2004 dog model, as used by AstraZeneca for in-silico Action Potential (isAP) simulations. This model was described in Davies et al., Am J Physiol Heart Circ Physiol 302:H1466-H1480, (2012).
Parameters:
Name | Description |
---|---|
prnak | 0.01833 |
GNa | 8.25 |
iupmax | 0.004375 |
CaMK0 | 0.05 |
KmNao | 87.5 |
GK1 | 0.5 |
Km | 0.0015 |
KmBSR | 0.00087 |
stim_offset | 0.0 |
BSLmax | 1.124 |
tau_pow_calcium | 10.0 |
ibarpca | 0.0575 |
GNaL | 0.011 |
kmko | 1.5 |
KmCao | 1.3 |
tbar | 0.07 |
kmpca | 0.0005 |
gitodv | 0.1805 |
Kmto2 | 0.1502 |
KmNai | 12.3 |
eta | 0.35 |
l | 0.01 |
FonRT | 0.0374358835078 |
Cto | 300.0 |
nsrmax | 15.0 |
CTNaClmax | 9.8443e-6 |
dtau_rel_max | 10.0 |
ksat | 0.27 |
kmc | 0.00238 |
GCab | 7.980336e-7 |
NCXmax | 5.85 |
Na_o | 150.0 |
CTKClmax | 7.0756e-6 |
stim_duration | 1.0 |
ibarnak | 0.61875 |
csqnbar | 10.0 |
Kmup | 0.00092 |
Ca_o | 1.8 |
cbar | 0.05 |
a | 0.0011 |
stim_period | 1000.0 |
kmt | 0.0005 |
KmCa | 0.000125 |
KmCaMK | 0.15 |
gacai | 1.0 |
K_o | 4.0 |
gacao | 0.341 |
dKmPLBmax | 0.00017 |
kmnai | 10.0 |
kmcsqn | 0.8 |
KmBSL | 0.0087 |
dJupmax | 0.75 |
pca | 0.000243 |
stim_amplitude | -80.0 |
GKrMax | 0.0138542 |
Cl_o | 154.6 |
PCl | 4.0e-7 |
BSRmax | 0.047 |
GClb | 0.000225 |
gks_max | 0.00746925 |
F | 96485.0 |
KmCai | 0.0036 |
States:
Name | Description |
---|---|
Cl_i(time) | 20.1543792471096 |
xr(time) | 0.255981702631947 |
fca2(time) | 0.854261813196152 |
Ca_ss(time) | 0.000225131045297696 |
fca(time) | 0.961568137796573 |
dp(time) | 8.99805432294836 |
f(time) | 0.999986839648304 |
J(time) | 0.998157020148849 |
xs1(time) | 0.0147449166757808 |
Ca_nsr(time) | 4.14835141174613 |
mL(time) | 0.000382187369845771 |
m(time) | 0.000382187369845771 |
xs2(time) | 0.0147504787196957 |
ro(time) | -1.07543858779373e-32 |
Ca_jsr(time) | 4.1270622547589 |
Na_i(time) | 17.9964119779802 |
zdv(time) | 0.787996527242362 |
d(time) | 5.38067794749339e-7 |
V(time) | -93.2932771154856 |
f2(time) | 0.989081601403786 |
ydv(time) | 0.00894974857468432 |
CaMKtrap(time) | 0.0971591072782679 |
K_i(time) | 134.555737634453 |
AA(time) | 0.0014969201082975 |
ydv2(time) | 0.999992183094244 |
H(time) | 0.99765453819431 |
Ca_i(time) | 0.000223768331231758 |
ri(time) | 0.716604593002322 |
hL(time) | 0.488129650338831 |
dawson_lea_irvine_2003
— v0.0.1Dawson, Lea, Irvine, 2003
Details
Parameters:
Name | Description |
---|---|
k2 | 100.0 |
k4_ | 1.0 |
k10 | 500.0 |
k9 | 5000.0 |
k7_ | 1.0 |
k1 | 1.0 |
k8 | 500.0 |
k3_ | 10.0 |
k2_ | 12000.0 |
k4 | 1.0 |
k3 | 100.0 |
k6_ | 2.4 |
k7 | 10.0 |
k6 | 2.0 |
k5 | 10.0 |
k1_ | 10.0 |
k5_ | 1.0 |
States:
Name | Description |
---|---|
R_(time) | nothing |
Ca_cyt(time) | nothing |
O1(time) | nothing |
I(time) | nothing |
R(time) | nothing |
Ca_L(time) | nothing |
O2(time) | nothing |
C1(time) | nothing |
R__(time) | nothing |
Ca_ER(time) | nothing |
decker_2009
— v0.0.1Decker 2009
Details
Parameters:
Name | Description |
---|---|
prnak | 0.01833 |
gamma_Cai | 1.0 |
gamma_Cao | 0.341 |
T | 310.0 |
PCab | 1.99508e-7 |
iupbar | 0.004375 |
tau_hL | 600.0 |
KmNao | 87.5 |
Km | 0.0015 |
CT_Na_Cl_max | 2.46108e-5 |
delta_beta_0 | 1.0 |
cmdn_bar | 0.05 |
KmpCa | 0.0005 |
sigma | 1.0 |
stim_offset | 0.0 |
V_half | -92.0 |
BSLmax | 1.124 |
KmBSR | 0.00087 |
theta | 1.0 |
zCl | -1.0 |
kmup | 0.00092 |
Vmax | 4.5 |
tautr | 25.0 |
gto1 | 0.497458 |
h_beta | 10.0 |
KmCao | 1.3 |
alpha_CaMK | 0.05 |
kmko | 1.5 |
KmNai | 12.3 |
theta_I | 1.0e-6 |
Krel_tau | 0.0123 |
km_trpn | 0.0005 |
eta | 0.27 |
l | 0.01 |
delta_kmPLB_bar | 0.00017 |
kCa_ito2 | 0.4 |
Krel_infinity | 1.0 |
tau_i2f | 8.0 |
km_cmdn | 0.00238 |
gKr_max | 0.0138542 |
ksat | 0.32 |
g_K1_max | 0.5 |
gamma_Ca_i | 1.0 |
gNaL | 0.0065 |
K_beta | 0.28 |
tau_diff_ss | 2.0 |
nsrbar | 15.0 |
Na_o | 140.0 |
stim_duration | 0.5 |
PCa | 0.00015552 |
gClb | 0.000225 |
delta_iupCaMK_bar | 0.75 |
ibarnak | 1.4 |
gpCa | 0.0575 |
csqnbar | 10.0 |
Ca_o | 1.8 |
CT_K_Cl_max | 1.77e-5 |
a | 0.0011 |
stim_period | 1000.0 |
kappa | 0.1125 |
PNab | 3.2e-9 |
gKp | 0.00276 |
K_o | 5.4 |
beta_0 | 4.75 |
trpn_bar | 0.07 |
tau_diff | 0.2 |
kmnai | 2.6 |
kmcsqn | 0.8 |
Ito2_max_scaling_factor | 1.0 |
g_Na | 9.075 |
KmCa_act | 0.000125 |
KmBSL | 0.0087 |
gamma_Ca_o | 0.341 |
CaMK_0 | 0.05 |
stim_amplitude | -80.0 |
PCl | 9.0e-7 |
Cl_o | 100.0 |
h_rel | 8.0 |
gKs_max | 0.0826 |
beta_CaMK | 0.00068 |
BSRmax | 0.047 |
R | 8314.0 |
KmCai | 0.0036 |
F | 96485.0 |
kmCaMK | 0.15 |
States:
Name | Description |
---|---|
Ca_NSR(time) | 1.01475649943057 |
C(time) | 0.99996982093287 |
C13(time) | 0.000644426171899078 |
C3(time) | 0.0512272866698557 |
O(time) | 2.26882961412491e-5 |
mL(time) | 0.00101841101248412 |
Irel(time) | 0.000714227102027745 |
Ca_ss_sr(time) | 0.00011296707102434 |
C5(time) | 0.000152923243503507 |
C11(time) | 0.00371438476499172 |
Cl_ss(time) | 20.6683605553303 |
C_star(time) | 7.49117189549873e-6 |
a(time) | 1.76776038804228e-5 |
C1(time) | 0.476679784307081 |
C14(time) | 8.62495047666861e-5 |
Na_ss_sr(time) | 8.01033434859049 |
i1s(time) | 0.947581184798815 |
i1f(time) | 0.997976503910799 |
C7(time) | 0.053324572164618 |
C10(time) | 0.0138769647384953 |
OI(time) | 8.01952813127322e-17 |
i2f(time) | 0.996044894628276 |
hL(time) | 0.319611809402137 |
CI_star(time) | 1.9237001017021e-9 |
Cl_i(time) | 20.6683603724432 |
xr(time) | 4.06959064407486e-6 |
C6(time) | 0.132814156809568 |
C2(time) | 0.255181042718489 |
C9(time) | 0.000318368292970148 |
j(time) | 0.99709036251243 |
O1(time) | 1.05292905767805e-5 |
m(time) | 0.00101841101248412 |
C4(time) | 0.0045705849736195 |
C12(time) | 0.000248553788631871 |
C15(time) | 1.12344645485893e-5 |
CI(time) | 5.89853003114132e-11 |
Na_i(time) | 8.01031392415197 |
O_star(time) | 1.23556404128518e-10 |
h(time) | 0.991354143386887 |
K_i(time) | 144.907134343314 |
Ca_ss_CaL(time) | 0.000119239795531548 |
Ca_JSR(time) | 0.993914988616979 |
Vm(time) | -87.4947322902196 |
CaMK_trap(time) | 0.0114911034744777 |
Ca_i(time) | 8.38749860095482e-5 |
C8(time) | 0.00713656414955778 |
deformingheart
— v0.0.1Deforming Heart
Details
DeltaNotch
— v0.0.1Delta-Notch Intercellular Signalling
Details
demir_clark_giles_1999
— v0.0.1Demir, Clark, Giles, 1999
Details
Parameters:
Name | Description |
---|---|
g_Ca_L_cont | 0.02115 |
T | 310.0 |
K_m_K | 0.621 |
P_Na | 0.00344 |
g_K_ACh_base | 0.007833 |
Km_Iso | 0.00014 |
K_ADC | 0.008 |
Mg_i | 2.5 |
f_Vagal | 200.0 |
d_NaCa | 0.0001 |
alpha_up | 0.08 |
V_PDE | 20.0 |
i_NaK_max | 0.2192 |
alpha_rel | 0.5 |
g_f_K | 0.0128821 |
K_PDE | 6.0 |
Cm | 5.5e-5 |
Ca_b | 2.0 |
g_B_K | 6.94e-5 |
beta_up | 0.072 |
tau_p | 0.01 |
k_rel | 0.004 |
Na_b | 140.0 |
k_xcs | 0.9 |
i_Ca_P_max | 0.02869 |
ACh | 0.0 |
Vol | 3.497e-6 |
cGMP | 0.002 |
g_B_Na | 0.00016 |
E_Ca_T | 45.0 |
P_M2_ADC | 0.02 |
k_SRCa | 22.0 |
K_m_Na | 5.46 |
g_B_Ca | 3.64e-5 |
Iso | 0.0 |
Km_ACh | 0.00014 |
g_f_Na | 0.0067478 |
k_cyca | 5.0e-5 |
E_Ca_L | 46.4 |
g_Ca_T | 0.02521 |
gamma | 0.5 |
K_NaCa | 1.248e-5 |
R | 8314.472 |
K_b | 5.4 |
F | 96485.3415 |
States:
Name | Description |
---|---|
P_a(time) | 0.02302278 |
F3(time) | 0.8859153 |
Ca_Mg_Trop(time) | 0.7618549 |
y(time) | 0.09227776 |
Mg_Mg_Trop(time) | 0.2097049 |
f_T(time) | 0.1945111 |
d_L(time) | 0.002572773 |
cAMP(time) | 0.003 |
m(time) | 0.250113 |
Ca_Calmod(time) | 0.1411678 |
Na_i(time) | 9.701621 |
Ca_Trop(time) | 0.07331396 |
d_T(time) | 0.02012114 |
Ca_rel(time) | 16.85024 |
h2(time) | 0.002065463 |
V(time) | -49.54105 |
K_c(time) | 5.389014 |
Ca_Calse(time) | 0.9528726 |
a(time) | 0.0 |
K_i(time) | 140.7347 |
Ca_c(time) | 2.00474 |
P_i(time) | 0.3777728 |
F1(time) | 0.1133251 |
f_L(time) | 0.98651 |
h1(time) | 0.001386897 |
Na_c(time) | 139.9988 |
Ca_up(time) | 16.95311 |
Ca_i(time) | 0.0003787018 |
F2(time) | 0.0007594214 |
demir_clark_giles_murphey_1994
— v0.0.1Demir, Clark, Giles, Murphey, 1994
Details
Parameters:
Name | Description |
---|---|
Vol | 3.497e-6 |
T | 310.0 |
K_m_K | 0.621 |
P_Na | 0.00344 |
g_B_Na | 0.00016 |
E_Ca_T | 45.0 |
Mg_i | 2.5 |
d_NaCa | 0.0001 |
alpha_up | 0.08 |
i_NaK_max | 0.2192 |
alpha_rel | 0.5 |
g_f_K | 0.0128821 |
k_SRCa | 22.0 |
Cm | 5.5e-5 |
K_m_Na | 5.46 |
Ca_b | 2.0 |
beta_up | 0.072 |
g_B_K | 6.94e-5 |
tau_p | 0.01 |
g_B_Ca | 3.64e-5 |
k_rel | 0.004 |
Na_b | 140.0 |
g_f_Na | 0.0067478 |
k_cyca | 5.0e-5 |
E_Ca_L | 46.4 |
k_xcs | 0.9 |
g_Ca_T | 0.02521 |
g_Ca_L | 0.02115 |
gamma | 0.5 |
K_NaCa | 1.248e-5 |
R | 8314.472 |
i_Ca_P_max | 0.02869 |
F | 96485.3415 |
K_b | 5.4 |
States:
Name | Description |
---|---|
P_a(time) | 0.02302278 |
F3(time) | 0.8859153 |
Ca_Mg_Trop(time) | 0.7618549 |
y(time) | 0.09227776 |
Mg_Mg_Trop(time) | 0.2097049 |
f_T(time) | 0.1945111 |
d_L(time) | 0.002572773 |
m(time) | 0.250113 |
Ca_Calmod(time) | 0.1411678 |
Na_i(time) | 9.701621 |
Ca_Trop(time) | 0.07331396 |
d_T(time) | 0.02012114 |
Ca_rel(time) | 16.85024 |
h2(time) | 0.002065463 |
V(time) | -49.54105 |
K_c(time) | 5.389014 |
Ca_Calse(time) | 0.9528726 |
Ca_c(time) | 2.00474 |
K_i(time) | 140.7347 |
P_i(time) | 0.3777728 |
F1(time) | 0.1133251 |
f_L(time) | 0.98651 |
h1(time) | 0.001386897 |
Na_c(time) | 139.9988 |
Ca_up(time) | 16.95311 |
Ca_i(time) | 0.0003787018 |
F2(time) | 0.0007594214 |
demiray_1981
— v0.0.1Demiray, 1981
Details
dempsher_gann_phair_1984
— v0.0.1Dempsher, Gann, Phair, 1984
Details
Parameters:
Name | Description |
---|---|
Ka | 10.0 |
Q | 0.042 |
Vmsm | 6.0 |
Kbac | 10.0 |
C | 6.25 |
P | 0.052 |
Kcb | 0.01 |
T | 8.0 |
Km | 270.0 |
Kdsm | 10.0 |
HY | 16.4 |
Ko | 0.013 |
Kmptr | 150.0 |
AH | 16.4 |
Vm | 1890.0 |
Kb | 1.0e6 |
Kd | 2.11 |
HA | 0.5 |
Vmptr | 500.0 |
D | 125.0 |
Vdsm | 10.0 |
S | 76.0 |
Kcf | 0.00033 |
U | 0.0015 |
Crpt | 3.0 |
LH | 0.724 |
R | 3.0 |
K | 80.0 |
Lmtr | 1.65 |
n | 4.0 |
States:
Name | Description |
---|---|
CHOM(time) | 139.0 |
V(time) | 11.3 |
CHON(time) | 3.03 |
HYPR(time) | 0.64 |
W(time) | 10.0 |
Kfor(time) | 0.37 |
CORT(time) | 5.2 |
Kmtr(time) | 0.446 |
cAMP(time) | 0.95 |
CHOC(time) | 532.0 |
PREG(time) | 6.56 |
CHOL(time) | 3000.0 |
PRO(time) | 0.64 |
depaor_timmons_1986
— v0.0.1Depaor, Timmons, 1986
Details
Parameters:
Name | Description |
---|---|
p | 1.05 |
alpha | 1.0 |
t2 | 0.5 |
k | 10.5 |
a | 1.0 |
t1 | 0.1 |
beta | 1.0 |
r1 | 1.2 |
r0 | 0.5 |
t4 | 20.0 |
d | 5.0 |
States:
Name | Description |
---|---|
x3(time) | 0.0 |
r(time) | 0.5 |
h(time) | 0.0 |
x2(time) | 0.0 |
x1(time) | 0.0 |
devries_sherman_2000
— v0.0.1Devries, Sherman, 2000
Details
Parameters:
Name | Description |
---|---|
V_m | -20.0 |
g_s | 4.0 |
theta_n | 5.6 |
tau | 20.0 |
V_K | -75.0 |
V_s | -22.0 |
g_K | 10.0 |
g_K_ATP | 1.2 |
tau_s | 20000.0 |
V_Ca | 25.0 |
V_n | -17.0 |
lambda | 0.9 |
g_Ca | 3.6 |
theta_m | 12.0 |
p | 0.5 |
theta_s | 8.0 |
States:
Name | Description |
---|---|
V(time) | -64.0 |
n(time) | 0.01 |
s(time) | 0.01 |
devries_sherman_2001
— v0.0.1Devries, Sherman, 2001
Details
Parameters:
Name | Description |
---|---|
V_m | -20.0 |
g_s | 4.0 |
theta_n | 5.6 |
tau | 20.0 |
V_K | -75.0 |
beta | 0.0 |
V_s | -38.0 |
g_K | 10.0 |
tau_s | 35000.0 |
V_Ca | 25.0 |
V_n | -16.0 |
g_Ca | 3.6 |
lamda | 0.8 |
theta_m | 12.0 |
theta_s | 10.0 |
States:
Name | Description |
---|---|
V(time) | nothing |
n(time) | nothing |
s(time) | nothing |
deyoung_keizer_1992
— v0.0.1Deyoung, Keizer, 1992
Details
Parameters:
Name | Description |
---|---|
c1 | nothing |
a3 | nothing |
v4 | nothing |
a2 | nothing |
a1 | nothing |
v1 | nothing |
b2 | nothing |
alpha | nothing |
K_d1 | nothing |
IP3_cold | nothing |
Ir | nothing |
b5 | nothing |
a4 | nothing |
k4 | nothing |
v2 | nothing |
k3 | nothing |
a5 | nothing |
c0 | nothing |
K_d2 | nothing |
v3 | nothing |
States:
Name | Description |
---|---|
Ca_i(time) | nothing |
IP3(time) | nothing |
x_001(time) | nothing |
x_010(time) | nothing |
x_000(time) | nothing |
difrancesco_noble_1985
— v0.0.1Difrancesco, Noble, 1985
Details
Parameters:
Name | Description |
---|---|
T | 310.0 |
C | 0.075 |
Km_to | 10.0 |
Km_Ca | 0.0005 |
Ca_up_max | 5.0 |
length | 2.0 |
d_NaCa | 0.001 |
Ve | 0.00157 |
g_f_K | 3.0 |
Kb | 4.0 |
delta_f | 0.0001 |
g_to | 0.28 |
Km_K1 | 210.0 |
tau_rep | 2.0 |
tau_up | 0.025 |
K_mNa | 40.0 |
g_K1 | 920.0 |
delta_m | 1.0e-5 |
delta_y | 1.0e-5 |
K_mCa | 0.001 |
V_e_ratio | 0.1 |
tau_rel | 0.05 |
I_p | 125.0 |
Cao | 2.0 |
n_NaCa | 3.0 |
g_Nab | 0.18 |
K_mf2 | 0.001 |
Km_f | 45.0 |
radius | 0.05 |
delta_d | 0.0001 |
Nao | 140.0 |
alpha_f2 | 5.0 |
K_mK | 1.0 |
rCa | 2.0 |
P_si | 15.0 |
g_Na | 750.0 |
g_Cab | 0.02 |
g_f_Na | 3.0 |
i_pulse | 0.0 |
i_K_max | 180.0 |
gamma | 0.5 |
K_NaCa | 0.02 |
R | 8314.472 |
pf | 0.7 |
F | 96485.3415 |
States:
Name | Description |
---|---|
d(time) | 0.005 |
Ca_rel(time) | 1.0 |
V(time) | -87.0 |
h(time) | 0.8 |
f2(time) | 1.0 |
x(time) | 0.01 |
y(time) | 0.2 |
f(time) | 1.0 |
Kc(time) | 4.0 |
Ki(time) | 140.0 |
p(time) | 1.0 |
m(time) | 0.01 |
Ca_up(time) | 2.0 |
Cai(time) | 5.0e-5 |
Nai(time) | 8.0 |
s(time) | 1.0 |
dijkstra_neal_beever_france_1992
— v0.0.1Dijkstra, Neal, Beever and France, 1992
Details
Parameters:
Name | Description |
---|---|
v_AmMa_star | 0.0528 |
D_Vl | 1.0 |
J_Am_HaVa | 0.00861 |
D_Sr | 1.0 |
f_Hf_AmMc | 0.526 |
Y_Ps_InPs | 0.0091 |
Y_Vl_StVl | 1.0 |
Y_Ps_PdPs | 1.0 |
J_Hc_PsAm | 0.0165 |
D_Ac | 1.0 |
f_Ce_Fd | 1.0 |
Y_Bu_PsBu | 1.0 |
v_PsMc_star | 0.0576 |
Y_As_HaAs | 112.5 |
M_Hc_AmMc | 0.0159 |
phi_pH_AmAb | 7.85 |
pH | 7.0 |
M_Sd_SdHa_star | 0.416 |
v_HaVa_star | 0.1646 |
Y_Li_InLi | 0.0015 |
Y_Pr_CePr | 1.0 |
D_Fu | 1.0 |
M_Fd_FdHc_star | 0.332 |
D_Pd | 1.0 |
Y_Am_McAm | 0.0084 |
Y_Ps_MaMd | 0.0067 |
Y_Ps_SaPs | 0.001 |
phi_pH_AcAb | 6.48 |
R_Ha_PsMa | 1.291 |
M_Pr_PrAb | 0.338 |
Y_Pr_HePr | 1.0 |
M_pH_AmAb | 7.5 |
Y_Ac_CeAc | 1.0 |
Y_Am_PsAm | 1.257 |
Y_Ha_SrHa | 0.0062 |
T_Pd_star | 0.66 |
f_Hf_AmMa | 0.526 |
Y_Pr_PsPr | 1.0 |
v_FdHc_star | 0.1646 |
Y_Sd_InSd | 0.0062 |
V_Ru | 1.0 |
Y_Ac_PsAc | 1.0 |
M_Vl_VlAb | 0.338 |
R_Ha_McMa | 0.0086 |
T_Pd | 1.0 |
R_Hc_PsMc | 1.291 |
Y_Ac_WrAc | 1.0 |
Y_Pu_InPu | 0.0091 |
Y_Hc_FdHc | 1.0 |
phi_pH_PrAb | 6.48 |
v_SdHa_star | 0.2179 |
J_Ps_HcVa | 0.01465 |
D_Pu | 1.0 |
Y_Bu_WrBu | 1.0 |
Y_Bu_HeBu | 1.0 |
M_Ps_PsMc | 0.0224 |
J_Am_HcVa | 0.00861 |
M_pH_FdHc | 5.97 |
D_Ps | 1.0 |
Y_Li_MaMd | 0.00021 |
v_HaAs_star | 0.053 |
Y_Ha_SdHa | 1.0 |
f_Hf_HaAs | 0.306 |
phi_pH_FdHc | 22.9 |
D_Li | 1.0 |
v_AcAb_star | 7.86 |
v_UeAm_star | 0.00165 |
M_Ps_PsMa | 0.0224 |
M_Am_AmAb | 0.0132 |
Y_Ha_WrHa | 0.0062 |
Y_Vl_PsVl | 1.0 |
J_pH_VlAb | 6.45 |
M_Bu_BuAb | 0.338 |
Y_Ac_InAc | 0.0167 |
M_Mc_McEg | 34.694 |
Y_Ma_AmMa | 118.91 |
D_Fd | 1.0 |
J_pH_BuAb | 6.45 |
J_Ha_McAm | 0.0165 |
M_Am_AmMc | 0.00135 |
f | 1.0 |
Y_Ac_StAc | 1.0 |
Y_Fd_InFd | 0.0062 |
J_pH_AcAb | 6.45 |
D_Sd | 1.0 |
Y_Vl_WrVl | 1.0 |
T_Sd | 1.0 |
M_Ac_AcAb | 0.338 |
R_Hc_AmMc | 1.793 |
Y_Ps_McPs | 0.0067 |
Y_Fu_InFu | 0.0062 |
v_BuAb_star | 7.86 |
v_AmMc_star | 0.0528 |
Y_Pr_WrPr | 1.0 |
f_Lc_Le | 2.25 |
T_Sd_star | 1.04 |
Y_Am_InAm | 0.0588 |
Y_Ma_McMa | 149.48 |
v_PrAb_star | 7.86 |
pm | 1.0 |
k_SoEx | 1.0 |
J_Ha_PsAm | 0.0165 |
M_Pd_PdPs_star | 0.264 |
Y_Bu_CeBu | 1.0 |
Y_Am_UeAm | 2.0 |
v_AmAb_star | 1.1 |
Y_Vl_HeVl | 1.0 |
k_FlEx | 1.0 |
M_Ha_PsMa | 0.0248 |
v_PsAm_star | 0.0144 |
f_Hf_PsMc | 0.711 |
f_Po_Ma | 0.35 |
D_Pr | 1.0 |
M_Ha_McMa | 0.0248 |
J_pH_PrAb | 6.45 |
v_PdPs_star | 0.0576 |
M_Ha_HaAs | 0.0268 |
T_Fd | 1.0 |
Y_Ma_PsMa | 149.48 |
D_La | 1.0 |
v_PsMa_star | 0.0576 |
J_Am_UeAm | 0.00621 |
Y_Pr_StPr | 1.0 |
v_VlAb_star | 7.86 |
D_Bu | 1.0 |
T_Fd_star | 0.83 |
M_Ha_HaVa | 0.055 |
R_Ha_AmMa | 1.793 |
Y_Vl_InVl | 0.0098 |
M_Hc_HcVa | 0.055 |
Y_Bu_StBu | 1.0 |
M_Am_AmMa | 0.00135 |
phi_pH_VlAb | 6.48 |
M_Ha_AmMa | 0.0159 |
Y_Ha_MaMd | 0.0062 |
Y_Mc_PsMc | 149.48 |
Y_Pr_InPr | 0.0135 |
Y_Ac_HeAc | 1.0 |
v_McEg_star | 15.439 |
Y_Ha_LaHa | 0.0025 |
f_Hf_McMa | 0.711 |
Y_Pd_InPd | 0.0091 |
Y_Mc_AmMc | 118.91 |
phi_pH_BuAb | 6.48 |
M_Ps_PsAm | 0.0289 |
f_Hf_PsMa | 0.711 |
Y_Bu_InBu | 0.0114 |
D_Wr | 1.0 |
J_Ps_HaVa | 0.01465 |
Y_Vl_CeVl | 1.0 |
M_Hc_PsMc | 0.0248 |
D_Am | 1.0 |
f_Ni_Fe | 1.0 |
v_HcVa_star | 0.1646 |
States:
Name | Description |
---|---|
Q_Pu(time) | 1.0 |
Q_Ac(time) | 1.0 |
Q_Bu(time) | 1.0 |
Q_Li(time) | 1.0 |
Q_Ma(time) | 1.0 |
Q_As(time) | 1.0 |
Q_Am(time) | 1.0 |
Q_Pr(time) | 1.0 |
Q_Mc(time) | 1.0 |
Q_Hc(time) | 1.0 |
Q_Vl(time) | 1.0 |
Q_Fd(time) | 1.0 |
Q_Fu(time) | 1.0 |
Q_Sd(time) | 1.0 |
Q_Ps(time) | 1.0 |
Q_Pd(time) | 1.0 |
Q_Ha(time) | 1.0 |
dixit_perelson_2004
— v0.0.1Dixit, Perelson, 2004
Details
Parameters:
Name | Description |
---|---|
F | 1.0 |
ka | 14.64 |
c | 23.0 |
k | 2.4e-8 |
IC50 | 9.0e-7 |
ke | 6.86 |
D | 600.0 |
tau | 1.5 |
kecell | 1.1 |
delta | 0.01 |
Vd | 28000.0 |
m | 0.01 |
N | 2500.0 |
kacell | 24000.0 |
lamda | 10000.0 |
fb | 0.99 |
H | 0.052 |
d | 0.01 |
States:
Name | Description |
---|---|
VNI(time) | 2.0 |
VI(time) | 1.0 |
T(time) | 1.0e6 |
Cc(time) | 0.0 |
T_(time) | 1.0 |
dokos_celler_lovell_1996
— v0.0.1Dokos, Celler, Lovell, 1996
Details
Parameters:
Name | Description |
---|---|
K3ni | 26.44 |
T | 310.0 |
C | 3.2e-5 |
P_KNa | 0.035 |
tau_dL | 0.002 |
K1ni | 395.3 |
Cab | 2.0 |
Kb | 5.4 |
Kcni | 26.44 |
KmK | 1.0 |
Qco | 0.0 |
Kco | 3.663 |
g_fNa | 0.0081 |
KmCaup | 0.0005 |
KmCarel | 0.001 |
tau_tr | 0.4 |
tau_b | 0.1 |
Kk | 0.00026 |
tau_rel | 0.005 |
K1no | 1628.0 |
g_Nab | 0.00024 |
K2no | 561.4 |
Qn | 0.4315 |
Nab | 140.0 |
K3no | 4.663 |
alpha_fL2 | 3.0 |
KbK | 7.0e-5 |
K2ni | 2.289 |
V_i | 2.5e-6 |
beta_fL2 | 40000.0 |
KmNa | 40.0 |
Qci | 0.1369 |
Kci | 0.0207 |
g_fK | 0.0135 |
g_Na | 0.25 |
i_up_max | 0.0212 |
i_pmax | 0.226 |
Kmf | 10.3 |
kNaCa | 4.0 |
g_CaT | 0.085 |
g_CaL | 0.4 |
R | 8314.472 |
F | 96485.3415 |
States:
Name | Description |
---|---|
Caup(time) | 0.5832 |
fL(time) | 0.1505 |
dT(time) | 0.001 |
h(time) | 0.0087 |
x(time) | 0.5682 |
y(time) | 0.0287 |
Cao(time) | 2.0004 |
fT(time) | 0.1328 |
Ko(time) | 5.4243 |
E(time) | -64.9 |
Ki(time) | 140.0073 |
fL2(time) | 0.219 |
m(time) | 0.0139 |
dL(time) | 0.0001 |
Cai(time) | 3.4e-5 |
Nai(time) | 7.4994 |
Carel(time) | 0.1101 |
Nao(time) | 139.9929 |
dougherty_wright_yew_2005
— v0.0.1Dougherty, Wright, Yew, 2005
Details
Parameters:
Name | Description |
---|---|
ninh | 1.5 |
pd | 20.0 |
k_1 | 0.06 |
n_1 | 2.0 |
kI | 0.7 |
clmax | 1.0 |
r_2 | 5.0 |
kinhcng | 1.0 |
R_tot | 1.0 |
n_2 | 2.0 |
ef | 2.0 |
V_Cl | -50.0 |
G_tot | 1.0 |
smax | 71.0 |
cc1lin | 0.88 |
k_2 | 20.0 |
hmc_1 | 2.0 |
gl | 6.0 |
t_1 | 1.5 |
cc_2 | 26.0 |
cap | 0.004 |
ck1lin | 13.0 |
inf | 1.9 |
V_l | -70.0 |
cx2 | 13.0 |
inhmax | 5.0 |
r_1 | 10.0 |
nI | 2.0 |
kinh | 2.0 |
V_cng | 0.0 |
cnmax | 1.0 |
cx1lin | 1.0 |
ck_2 | 0.9 |
C_vol | 1.0e-13 |
hmc_2 | 3.0 |
ninhcng | 1.3 |
od | 20.0 |
F | 96490.0 |
t_0 | 0.5 |
States:
Name | Description |
---|---|
aCaMK(time) | 6.60756525051462e-8 |
V(time) | -70.0 |
cAMP(time) | 1.35648992164649e-88 |
CaCaM(time) | 1.86113118246926e-13 |
bLR(time) | 0.0 |
aG(time) | 0.0 |
Ca(time) | 5.09073088043779e-12 |
drouhard_roberge_1987
— v0.0.1Drouhard, Roberge, 1987
Details
Parameters:
Name | Description |
---|---|
C | nothing |
g_s | nothing |
beta_x1 | nothing |
Istim | nothing |
g_Na | nothing |
alpha_x1 | nothing |
E_Na | nothing |
States:
Name | Description |
---|---|
d(time) | nothing |
V(time) | nothing |
h(time) | nothing |
m(time) | nothing |
Cai(time) | nothing |
f(time) | nothing |
x1(time) | nothing |
dumaine_towbin_brugada_vatta_nesterenko_nesterenko_brugada_brugada_antzelevitch_1999
— v0.0.1Dumaine, Towbin, Brugada, Vatta, Nesterenko, Nesterenko, Brugada, Brugada, Antzelevitch, 1999
Details
Parameters:
Name | Description |
---|---|
gamma_Cai | nothing |
gamma_Cao | nothing |
T | nothing |
Tn_max | nothing |
calcium_overload | nothing |
P_Na | nothing |
Km_Ca | nothing |
delta_Ca_i2 | nothing |
K_mup | nothing |
delta_Ca_ith | nothing |
K_sat | nothing |
gamma_Nao | nothing |
tau_on | nothing |
g_to | nothing |
CMDN_max | nothing |
Cm | nothing |
P_ns_Ca | nothing |
V_NSR | nothing |
R_A_V | nothing |
PR_NaK | nothing |
K_mNa | nothing |
eta | nothing |
V_myo | nothing |
tau_tr | nothing |
Ca_NSR_max | nothing |
K_mCa | nothing |
Cao | nothing |
g_Nab | nothing |
K_mpCa | nothing |
gamma_Nai | nothing |
V_JSR | nothing |
K_mCSQN | nothing |
t | nothing |
gamma_Ki | nothing |
I_st | nothing |
K_m_ns_Ca | nothing |
K_mCMDN | nothing |
tau_off | nothing |
A_cap | nothing |
I_pCa | nothing |
I_NaK | nothing |
Nao | nothing |
K_mNai | nothing |
P_Ca | nothing |
g_Na | nothing |
I_up | nothing |
V_cleft | nothing |
g_Cab | nothing |
CSQN_th | nothing |
g_Kp | nothing |
K_mrel | nothing |
CSQN_max | nothing |
gamma_Ko | nothing |
K_mTn | nothing |
K_NaCa | nothing |
K_mKo | nothing |
R | nothing |
P_K | nothing |
F | nothing |
States:
Name | Description |
---|---|
d(time) | nothing |
V(time) | nothing |
X(time) | nothing |
Ca_NSR(time) | nothing |
h(time) | nothing |
z(time) | nothing |
y(time) | nothing |
f(time) | nothing |
Ko(time) | nothing |
Ca_JSR(time) | nothing |
Ki(time) | nothing |
j(time) | nothing |
m(time) | nothing |
Cai(time) | nothing |
Nai(time) | nothing |
Ca_foot(time) | nothing |
dupont_berridge_goldbeter_1990
— v0.0.1Latency correlates with period in a model for signal-induced Ca2+ oscillations based on Ca2+induced Ca2+ release
Details
Oscillations in cytosolic Ca2+ develop in a variety of cells after an induction phase, called latency, the duration of which depends on the magnitude of external stimulation. Experiments in hepatocytes indicate that the period and latency of Ca2+ oscillations both decrease as the level of the stimulus increases. We analyze the correlation between period and latency in a model recently proposed for signal-induced Ca2+ oscillations. We show that the linear relationship between period and latency observed in the experiments arises naturally in this model as a result of the mechanism of Ca2(+)-induced Ca2+ release on which it is based.
Parameters:
Name | Description |
---|---|
v0 | 2.7 |
K_A | 0.9 |
k | 10.0 |
v1 | 4.0 |
t_c | 0.8 |
k_f | 1.0 |
V_M2 | 65.0 |
m | 2.0 |
V_M3 | 500.0 |
K_R | 2.0 |
K_2 | 1.0 |
Beta_f | 0.15 |
p | 4.0 |
n | 2.0 |
States:
Name | Description |
---|---|
Z(time) | 0.2 |
Y(time) | 0.2 |
dupont_berridge_goldbeter_1991
— v0.0.1Dupont Berridge Goldbeter 1991
Details
Parameters:
Name | Description |
---|---|
n | 2.0 |
KA | 0.9 |
K2 | 1.0 |
k | 10.0 |
v1 | 7.3 |
VM2 | 65.0 |
KR | 2.0 |
beta | 0.6 |
betaf | 0.96 |
kf | 1.0 |
m | 2.0 |
tp | 4.0 |
VM3 | 500.0 |
p | 4.0 |
v0 | 1.0 |
States:
Name | Description |
---|---|
Z(time) | 0.1 |
Y(time) | 0.64 |
dupont_erneux_1997
— v0.0.1Simulations of the effects of inositol 1,4,5=trisphosphate 3-kinase and S-phosphatase activities on Ca+ oscillations
Details
Summary lnositol 1,4,5-trisphosphate (Ins-l ,4,5-P,) is responsible for Ca2+ mobilization in response to external stimulation in many cell types. The latter phenomenon often occurs as repetitive Ca2+ spikes. In this study, the effect of the two Ins-l ,4,5-P, metabolizing enzymes (Ins-l ,4,5-P, 3-kinase and 5-phosphatase) on the temporal pattern of Ca+ oscillations has been investigated. On the basis of the well-documented Ins-1,4,5-P, 3-kinase stimulation by the Ca+/calmodulin complex and of the experimentally-determined kinetic characteristics of these enzymes, we predict that 5-phosphatase primarily controls the levels of Ins-1,4,5-P,and, thereby, the occurrence and frequency of Ca+ oscillations. Consequently, the model reproduces the experimental observation performed in Chinese hamster ovary cells that 5-phosphatase overexpression has a much more pronounced effect on the pattern of Ca+ oscillations than 3- kinase overexpression. We also investigated, in more detail, under which conditions a similar effect could be observed in other cell types expressing various Ins-l ,4,5-P, 3-kinase activities.
Parameters:
Name | Description |
---|---|
n_i | 4.0 |
V_p2 | 0.2 |
Ca_tot | 80.0 |
b | 0.0007 |
K_d | 0.3 |
n_a | 3.0 |
K_p | 0.35 |
n_d | 2.0 |
n_p | 2.0 |
V_plc | 1.3 |
K_p1 | 10.0 |
V_p1 | 5.0 |
K_inh | 0.15 |
V_k | 0.5 |
k | 0.01 |
alpha | 0.1 |
V_MP | 4.0 |
K_p2 | 2.0 |
K_minus | 0.5 |
K_k | 1.0 |
K_act | 0.56 |
K_1 | 2.57 |
gamma | 0.2 |
K_IP | 1.0 |
States:
Name | Description |
---|---|
R_des(time) | 0.1 |
IP4(time) | 0.1 |
IP3(time) | 0.1 |
C_cyto(time) | 0.1 |
dupont_goldbeter_1992
— v0.0.1Dupont Goldbeter 1992
Details
Parameters:
Name | Description |
---|---|
Ka | 1.0 |
n | 2.0 |
KA | 0.9 |
v0 | 1.0 |
K2 | 0.01 |
v1beta | 2.4 |
VM2 | 65.0 |
k | 10.0 |
KP | 1.0 |
WT | 10.0 |
vP | 2.5 |
KR | 2.0 |
vMK | 100.0 |
kf | 1.0 |
m | 2.0 |
VM3 | 500.0 |
q | 4.0 |
p | 4.0 |
K1 | 0.01 |
States:
Name | Description |
---|---|
Z(time) | 0.2281 |
Y(time) | 1.454 |
Wstar(time) | 0.8916 |
E
earm_noble_1990
— v0.0.1Earm, Noble, 1990
Details
Parameters:
Name | Description |
---|---|
C_m | 4.0e-5 |
T | 310.0 |
stim_start | 0.1 |
alpha_Calmod | 100000.0 |
alpha_Trop | 100000.0 |
length | 0.08 |
d_NaCa | 0.0001 |
K_leak_rate | 0.0 |
alpha_up | 3.0 |
i_NaK_max | 0.14 |
g_to | 0.01 |
Trop | 0.15 |
beta_up | 0.23 |
K_cyca | 0.0003 |
beta_Trop | 200.0 |
K_mNa | 40.0 |
g_b_K | 0.0017 |
g_K1 | 0.017 |
delta_m | 1.0e-5 |
P_Ca_L | 0.05 |
K_srca | 0.5 |
V_e_ratio | 0.4 |
g_b_Ca | 5.0e-5 |
Na_o | 140.0 |
stim_duration | 0.002 |
K_c | 4.0 |
K_m_rel | 250.0 |
n_NaCa | 3.0 |
Ca_o | 2.0 |
ProdFracRate | 1.0 |
V_up_ratio | 0.01 |
stim_period | 1.0 |
stim_end | 100000.0 |
alpha_tr | 50.0 |
Calmod | 0.02 |
radius | 0.01 |
beta_Calmod | 50.0 |
g_b_Na | 0.00012 |
K_xcs | 0.4 |
V_rel_ratio | 0.1 |
K_mK | 1.0 |
g_Na | 0.5 |
stim_amplitude | -1.3 |
gamma | 0.5 |
g_to_s | 0.0 |
K_m_K1 | 10.0 |
k_NaCa | 0.0001 |
R | 8314.472 |
F | 96485.3415 |
States:
Name | Description |
---|---|
d(time) | 0.0011 |
Ca_Trop(time) | 0.0015 |
Ca_rel(time) | 0.3 |
V(time) | -91.6 |
h(time) | 0.015 |
K_i(time) | 140.0 |
ProdFrac(time) | 0.0 |
ActFrac(time) | 0.0 |
f_Ca(time) | 0.785 |
r(time) | 0.0 |
m(time) | 0.076 |
Ca_up(time) | 0.3 |
Ca_i(time) | 1.0e-5 |
s(time) | 1.0 |
Na_i(time) | 6.48 |
Ca_Calmod(time) | 0.0005 |
ebihara_johnson_1980
— v0.0.1Ebihara, Johnson, 1980
Details
Parameters:
Name | Description |
---|---|
C | nothing |
g_s | nothing |
beta_x1 | nothing |
Istim | nothing |
g_Na | nothing |
alpha_x1 | nothing |
E_Na | nothing |
States:
Name | Description |
---|---|
d(time) | nothing |
V(time) | nothing |
h(time) | nothing |
m(time) | nothing |
Cai(time) | nothing |
f(time) | nothing |
x1(time) | nothing |
Edwards_et_al
— v0.0.1Edwards, 2010
Details
Cellular mechanisms underlying nitric oxide-induced vasodilation of descending vasa recta
egli_bertram_sellix_freeman_2004
— v0.0.1Egli, Bertram, Sellix, Freeman, 2004
Details
Parameters:
Name | Description |
---|---|
rO | 1100.0 |
DA_infinity | 20000.0 |
vObar | 500.0 |
qD | 0.2 |
kO | 9.0 |
qO | 1.0 |
qP | 0.5 |
vDbar | 10000.0 |
kx | 50.0 |
kD | 300.0 |
rP | 300000.0 |
States:
Name | Description |
---|---|
DA(time) | 20000.0 |
OT(time) | 25.0 |
PRL(time) | 20.0 |
electrecoblu
— v0.0.1ElectrEcoBlu Standard Virtual Biological Machine
Details
Please click on one of the exposures below for documentation and model file access.
elowitz_leibler_2000
— v0.0.1Elowitz, Leibler, 2000
Details
Parameters:
Name | Description |
---|---|
n | 2.0 |
tps_repr | 0.0005 |
efficiency | 20.0 |
mRNA_halflife | 2.0 |
K_m | 40.0 |
prot_halflife | 10.0 |
tps_active | 0.5 |
States:
Name | Description |
---|---|
M_lacl(time) | 0.0 |
P_tetR(time) | 0.0 |
P_cl(time) | 0.0 |
M_tetR(time) | 20.0 |
M_cl(time) | 0.0 |
P_lacl(time) | 0.0 |
embc13_n62
— v0.0.1EMBC 2013 Tutorial - Noble 1962 reproducibility
Details
This workspace is used in the EMBC 2013 VPH tutorial to demonstrate reproducibility of published data using CellML models and OpenCOR. Complete details available at: http://abibook.readthedocs.org/en/EMBC-2013-tutorial/tutorials/embc13/scenario2/opencor.html
enciso_sontag_2004
— v0.0.1Enciso, Sontag, 2004
Details
Parameters:
Name | Description |
---|---|
b3 | 1.0 |
g2 | 10.0 |
b2 | 1.0 |
g1 | 10.0 |
b1 | 1.0 |
States:
Name | Description |
---|---|
T(time) | 0.0 |
R(time) | 0.1 |
L(time) | 0.0 |
endresen_1996
— v0.0.1Endresen, 1996
Details
Parameters:
Name | Description |
---|---|
V_B | -50.0 |
V_3 | -27.9375 |
g_j | 0.0 |
V_4 | 6.321 |
lambda_w | 20.7796 |
g_s | 382.9118 |
V_2 | 7.8589 |
V_K | -259.0783 |
V_s | 214.1429 |
g_K | 536.1093 |
V_1 | -35.9358 |
Cm | 60.0 |
ACh | 1.0e-6 |
States:
Name | Description |
---|---|
u(time) | 0.2344555 |
V(time) | -52.07606 |
w(time) | 0.0008971 |
eskandari_wright_loo_2005
— v0.0.1Eskandari, Wright, Loo 2005
Details
Kinetics of the Reverse Mode of the Na+/Glucose Cotransporter
Parameters:
Name | Description |
---|---|
k0_54 | 12190.0 |
k0_56 | 10.0 |
Na_o | 0.01 |
k0_21 | 500.0 |
k0_61_f | 5.0 |
T | 310.0 |
k0_34 | 50.0 |
Na_i | 0.5 |
k0_65_r | 4500.0 |
delta | 0.7 |
z_c | -2.0 |
k0_65_f | 50.0 |
k0_25 | 0.3 |
z_Na | 1.0 |
k0_12 | 80000.0 |
alpha_pp | 0.0 |
k0_45 | 800.0 |
k0_61_r | 3.0 |
k0_43 | 50.0 |
k0_16_f | 35.0 |
k0_32 | 20.0 |
glucose_o | 0.0 |
glucose_i | 0.1 |
area | 1.0e6 |
N_Avo | 6.022e23 |
k0_23 | 100000.0 |
k0_52 | 0.00091 |
k0_16_r | 350.0 |
N_C | 3.0e6 |
R | 8.314 |
F | 96485.34 |
n | 2.0 |
States:
Name | Description |
---|---|
C_1(time) | 0.0 |
C_3(time) | 0.0 |
V(time) | -0.15 |
C_2(time) | 0.0 |
C_5(time) | 0.0 |
C_6_temp(time) | 0.0 |
C_4(time) | 0.0 |
espinosa_1998
— v0.0.1Espinosa, 1998
Details
Parameters:
Name | Description |
---|---|
pf | 0.7 |
T | 310.0 |
stim_start | 0.02 |
alpha_Calmod | 100000.0 |
g_bca | 0.00025 |
alpha_Trop | 100000.0 |
length | 74.0 |
d_NaCa | 0.005 |
K_leak_rate | 0.05 |
alpha_up | 0.4 |
i_NaK_max | 0.7 |
Km_f2ds | 0.001 |
g_to | 0.08 |
delta_f | 0.0001 |
Trop | 0.05 |
delta_x | 0.0001 |
Cm | 9.5e-5 |
beta_up | 0.03 |
FRiNaCa | 0.001 |
FrICa | 1.0 |
K_cyca | 0.0003 |
beta_Trop | 200.0 |
K_mNa | 40.0 |
g_bna | 0.0001 |
g_K1 | 0.12 |
delta_m | 1.0e-5 |
P_Ca_L | 0.06 |
K_srca | 0.5 |
V_e_ratio | 0.4 |
Na_o | 148.5 |
V_ds_ratio | 0.1 |
stim_duration | 0.002 |
speed_d | 10.0 |
Kdecay | 10.0 |
K_m_rel | 250.0 |
g_tos | 0.15 |
n_NaCa | 3.0 |
Ca_o | 2.5 |
shift_h | 0.0 |
R_decay | 20.0 |
V_up_ratio | 0.01 |
stim_period | 0.5 |
stim_end | 9.0 |
K_mk1 | 10.0 |
K_m_Ca_ds | 0.01 |
Calmod | 0.02 |
radius | 12.0 |
beta_Calmod | 50.0 |
g_bk | 0.004 |
K_m_Ca_cyt | 0.0005 |
K_xcs | 0.4 |
V_rel_ratio | 0.1 |
P_CaK | 0.003 |
K_mK | 1.0 |
g_Na | 0.6 |
speed_f | 2.0 |
stim_amplitude | -1.8 |
Km_f2 | 100000.0 |
i_K_max | 1.5 |
P_CaNa | 0.01 |
gamma | 0.5 |
k_NaCa | 0.0002 |
R | 8314.472 |
F | 96485.3415 |
K_b | 5.4 |
States:
Name | Description |
---|---|
d(time) | 3.06884e-12 |
Ca_Trop(time) | 0.0017012 |
Ca_rel(time) | 0.43984 |
V(time) | -86.27784 |
f2(time) | 0.994096 |
h(time) | 0.9759885 |
x(time) | 2.3455e-6 |
f(time) | 0.9999977 |
K_i(time) | 140.1333 |
ActFrac(time) | 0.0113161 |
ProdFrac(time) | 0.9402563 |
Ca_ds(time) | 0.0008364 |
r(time) | 2.4223e-5 |
K_o(time) | 5.3201028 |
m(time) | 0.003956 |
Ca_up(time) | 0.479749 |
Ca_i(time) | 7.07933e-5 |
s(time) | 0.954689 |
f2ds(time) | 0.4387865 |
Na_i(time) | 6.835 |
Ca_Calmod(time) | 0.0024448 |
evans_errington_shelly_feeney_chapman_godfrey_smith_chappell_2004
— v0.0.1Evans, Errington, Shelly, Feeney, Chapman, Godfrey, Smith, Chappell, 2004
Details
Parameters:
Name | Description |
---|---|
kc_m | nothing |
BT | nothing |
ke | nothing |
ko_m | nothing |
kd | nothing |
Vn | nothing |
ki | nothing |
kb | nothing |
kc_c | nothing |
ko_c | nothing |
Vm | nothing |
Vc | nothing |
States:
Name | Description |
---|---|
Lc(time) | 0.0 |
Ln(time) | 0.0 |
Lm(time) | 10.0 |
Hc(time) | 0.0 |
Hm(time) | 0.0 |
F
faber_rudy_2000
— v0.0.1Faber, Rudy, 2000
Details
Parameters:
Name | Description |
---|---|
preplength | 0.1 |
stim_start | 10.0 |
Tn_max | 0.07 |
CMDN_max | 0.05 |
c2 | 0.0001 |
tau_tr | 120.0 |
Ca_NSR_max | 15.0 |
kATP | 0.00025 |
Cao | 1.8 |
gamma_Nai | 0.75 |
K_relss | 1.0 |
radius | 0.011 |
i_K_ATP_on | 1.0 |
I_pCa | 1.15 |
I_NaK | 2.25 |
Nao | 140.0 |
ATPi | 3.0 |
g_Kp | 0.00552 |
stim_amplitude | -80.0 |
K_mrel | 0.0008 |
CSQN_max | 10.0 |
nKNa | 2.8 |
K_mKo | 1.5 |
CSQNthresh | 0.7 |
F | 96485.0 |
nicholsarea | 5.0e-5 |
gamma_Cao | 0.341 |
qn | 9.0 |
T | 310.0 |
P_Na | 6.75e-7 |
Km_Ca | 0.0006 |
tau | 4.75 |
K_mup | 0.00092 |
G_Ks | 0.433 |
stim_period | 300.0 |
stim_end | 9.0e6 |
kdKNa | 66.0 |
K_mCSQN | 0.8 |
K_mTRPN | 0.0005 |
P_Ca | 0.00054 |
I_up | 0.00875 |
G_rel_overload | 4.0 |
K_mTn | 0.0005 |
R | 8314.0 |
TRPN_max | 0.07 |
G_rel_max | 60.0 |
Ko | 5.4 |
gamma_Nao | 0.75 |
Logicthresh | 0.98 |
c1 | 0.00025 |
g_Nab | 0.004 |
G_Kr | 0.02614 |
kappa | 0.125 |
K_m_ns_Ca | 0.0012 |
K_mNai | 10.0 |
G_K1 | 0.75 |
gamma_Cai | 1.0 |
hATP | 2.0 |
PNaK | 0.01833 |
delta_Ca_ith | 0.00018 |
delta_m | 1.0e-5 |
stim_duration | 0.5 |
g_K_Na | 0.12848 |
K_mpCa | 0.0005 |
K_mCMDN | 0.00238 |
gamma_Ki | 0.75 |
A_cap | 0.0001534 |
g_Na | 16.0 |
g_Cab | 0.003016 |
gamma_Ko | 0.75 |
g_CaT | 0.05 |
nATP | 0.24 |
gamma | 0.15 |
P_K | 1.93e-7 |
States:
Name | Description |
---|---|
OVRLDtrack3(time) | 0.0 |
NSR(time) | 1.516756041281 |
xr(time) | 0.000207067204 |
Ca_NSR(time) | 1.76731003671612 |
OVRLDtrack2(time) | 0.0 |
f(time) | 0.999390880784 |
Cainfluxtrack(time) | 2.69380318286645e-196 |
APtrack2(time) | 5.33944967562997e-195 |
xs1(time) | 0.007136102382 |
j(time) | 0.990731711845 |
m(time) | 0.001513296212 |
xs2(time) | 0.039518996812 |
Nai(time) | 10.0 |
APtrack3(time) | 0.000129515197402902 |
APtrack(time) | 9.65910542308504e-196 |
zdv(time) | 0.014537782303 |
d(time) | 5.906564e-6 |
g(time) | 0.988597502434 |
OVRLDtrack(time) | 0.0 |
V(time) | -85.126196430406 |
h(time) | 0.985318710339 |
ydv(time) | 0.99993940527 |
Ca_JSR(time) | 1.12791401197882 |
Ki(time) | 144.473230653346 |
b(time) | 0.001378275288 |
JSR(time) | 8.290468 |
CaT(time) | 0.01544711 |
Cai(time) | 0.000117482029668194 |
i_rel(time) | -4.74565e-19 |
fall_keizer_2001
— v0.0.1Fall, Keizer, 2001
Details
fallon_lauffenburger_2000
— v0.0.1Fallon, Lauffenburger, 2000
Details
Parameters:
Name | Description |
---|---|
kr | 0.0138 |
IL2 | 1.0 |
kh | 0.035 |
Ve | 1.0e-14 |
kt | 0.007 |
Vs | 11.0 |
ksyn | 0.0011 |
ke | 0.04 |
kx | 0.15 |
NA | 6.022e11 |
States:
Name | Description |
---|---|
Cs(time) | 1.0 |
Li(time) | 0.01 |
Y(time) | 2.5e8 |
Ld(time) | 1.0 |
Ci(time) | 1.0 |
Rs(time) | 1500.0 |
Ri(time) | 300.0 |
L(time) | 10.0 |